Paenibacillus sp. RUD330: CIC07_05900
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Entry
CIC07_05900 CDS
T11330
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prud Paenibacillus sp. RUD330
Brite
KEGG Orthology (KO) [BR:
prud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prud03032
]
CIC07_05900 (topA)
03400 DNA repair and recombination proteins [BR:
prud03400
]
CIC07_05900 (topA)
Enzymes [BR:
prud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CIC07_05900 (topA)
DNA replication proteins [BR:
prud03032
]
Prokaryotic type
DNA Topoisomerases
CIC07_05900 (topA)
DNA repair and recombination proteins [BR:
prud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CIC07_05900 (topA)
BRITE hierarchy
Other DBs
NCBI-ProteinID:
ASS65726
UniProt:
A0AAC9V5F9
LinkDB
All DBs
Position
complement(3122072..3124171)
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AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKFIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLDISETDTCRVVFNEITKQAVKD
AFKTPRKIDMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIIDREH
EIDAFIPEEYWSITAGLAKGKSEFEAKFHSLAGEKGELRSEAEMQRVLDAIGSKSFTVAE
VKEKERQRNPAPPFITSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTAGLITYMR
TDSTRISPIAQEETKEYITSKYGADYYPEQPRVYLKKNSNAQDAHEAIRPTSMAWEPDAV
KEFLSRDQYRLYKLVWERFVASQMSSAVLDTMTVDLAAGEVVFRAAGSKVKFPGFMKVYV
EGNDDGTTEEDKFLPALSVGDAVKTDSMVPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGDLVIQLMEEFFPEILDAEFTAHMEGDLDHVEEG
KEDWVKVLAQFYDSFEKRLEVAEEEMKEVELQDEVSDETCEKCGMPMVYKMGRFGKFLAC
SGFPDCRNTKPIVKSIGVVCPKCEKGHIIERRSKKGRIFFGCDQYPECDYVSWDRPSGKP
CPQCDSMLVVKRNKTGARLQCPSCDYTEELPEDQDPDQL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcacttgtcattgtcgaatcaccggcaaaagcaaagacgattggcaaatat
ttgggaagcaaattcattgtgaaagcctccatgggccacatccgagatttgccgaaaagc
cagatcggcgtcgaagtcgagaacgatttcaaccccaaatatattacgattcgcggcaaa
ggctccgtcctcaaggaacttaaggacgcgagcaaaaaagtcaaaaaagtttatctggcg
gctgacccggatcgcgaaggggaagcgatagcctggcatctggcgcattatctggacatc
agcgagacggacacctgccgcgtcgtcttcaacgagattacgaagcaggccgtcaaggac
gccttcaagactccgcgcaagatcgatatggatctcgtcaacgcccagcaggcgcgccgt
attctcgaccgcctcgtcggctacaagatcagccctctattatggaagaaagtcaaaaaa
ggcctctcggccggccgcgtccaatcggtagcggtgaagctgatcatcgaccgcgagcat
gagatcgatgccttcattccggaagagtactggtcgattacagcgggcctcgccaagggc
aagtccgaattcgaagcgaagttccacagccttgccggcgaaaagggagagctgcggagc
gaagccgagatgcagcgcgttctggatgccatcggcagcaagtccttcacggtagccgaa
gtgaaagagaaggagcgccagcgcaatccggctcctccgttcattaccagctcgctccag
caggaagccgcgcgcaagctgaacttccgcgcctccaagacgatgagcgtcgcccagcag
ctgtacgagggcgtcgacctcggcaaggaaggcacggcgggtcttattacgtatatgagg
accgattcgacccggatctccccgatagcgcaagaggaaaccaaggaatatatcacatcg
aaatacggcgccgactattatcccgagcagcctagggtgtatctgaagaagaacagcaac
gcccaggatgcgcatgaagcgatccgcccgacttcgatggcctgggagccggatgcggtc
aaagagtttttgagccgggatcagtatcgcctgtacaagcttgtctgggagcgcttcgta
gcgagccagatgagctcggccgtgctggatacgatgacggtggatctcgccgcaggagaa
gtcgtgttccgggcggcgggctccaaggtgaagttccccggattcatgaaggtgtatgtc
gaaggcaatgacgacgggacgacggaagaggataaattcctccctgcactgtcggtcgga
gacgcggtgaagacggattccatggttcccaagcagcatttcacgcagccgcctccccgc
tacacggaagcgcgtctcgtaaaaacgctggaagagctcggcatcggccgcccgtccacc
tacgctccgacgctggagacgatccagaagcgcggctacgtcgcgatcgaagagaagaaa
ttcatgccgaccgagcttggcgatctcgtcatccagctcatggaagagttcttccccgaa
attctggatgcggagttcaccgcccatatggaaggcgaccttgaccatgtcgaggaaggc
aaggaggactgggtcaaggtgctcgcccagttctacgattccttcgagaagcgtctggaa
gtagccgaggaagagatgaaggaagtcgagctccaggacgaggtttcggatgagacctgc
gagaaatgcggcatgccgatggtctacaaaatgggccgcttcggcaagttcctggcctgc
tcgggcttcccggactgccggaatacaaaaccgatcgtcaaaagcatcggagtcgtatgc
ccgaaatgcgagaaaggccacatcattgagcgccgcagcaaaaaaggaagaatctttttc
ggctgcgatcaatatcctgaatgtgactatgtctcctgggaccggccgtccggcaagcca
tgtcctcagtgcgacagcatgctcgtcgtgaagcggaacaagaccggagcccgtctccaa
tgcccttcctgcgactatacggaagagcttcccgaagaccaggatcccgatcagctgtaa
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