Paenibacillus sp. RUD330: CIC07_19310
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Entry
CIC07_19310 CDS
T11330
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prud Paenibacillus sp. RUD330
Pathway
prud03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIC07_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prud03400
]
CIC07_19310
Enzymes [BR:
prud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIC07_19310
DNA repair and recombination proteins [BR:
prud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CIC07_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ASS68039
UniProt:
A0AAC9YAG7
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Position
529110..530021
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AA seq
303 aa
AA seq
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MAGGDRVMSRSMLEVEGNRIEITHPDKMLWPAPGIRKADYLQKLVELAPYLIRYCSGRRL
TAIRFPNGVGGKSFYQKNAPEPTPEFVDIAEAGGVRYIDLNSVSTLLWLGNLGVLEFHPS
FDKIEDGMPGEWVLDIDPSEETRPRLMEAGSLIGEALDGMGIAAVPKTSGATGIQIVTPL
AKPYTFGQLRSLGAFLGHYLSDKYPRLFTVERSIRARRGRIYIDYVQHAAGKSLSAPYTP
RGRAEATVSTPLTWDEVRGEADPQAFTLHAIGERLQRMGDLLAAAEPQNLDAVLEFTAKR
AEA
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggctggaggggatcgtgttatgagccgaagcatgctggaggtcgagggcaaccgcatc
gagatcacccatccggataaaatgctgtggccggcgcccggcatccgcaaagccgattat
ttgcaaaagctcgtcgagcttgctccgtatcttatccgctactgcagcggacgccggctg
acggccatacgatttccgaatggcgtgggcggcaagtccttctaccagaagaacgcgcct
gagccgacgccagaattcgtggacatcgccgaagccggcggagtccgctacatcgatctg
aactctgtctcgacgcttctctggctcggcaatcttggagtgctggagttccatccctcc
ttcgacaagatcgaggacggcatgccgggcgagtgggtgctcgacatcgatccgtcggag
gaaacccgtccccgcctgatggaggcggggagtctgatcggcgaggcgctggacggcatg
ggcatcgccgccgtgcccaaaacgtcgggggcgacgggcatccagatcgtcaccccgctg
gccaagccgtatacgttcgggcagcttcggagcctgggagcttttctggggcattattta
tcagacaaatatccgcggctgttcacggtggagcggtcgatccgggcgcgcagaggaagg
atctacatcgactacgtccagcatgcggcgggcaagagcctctcggctccctacacgccg
agaggacgggcggaagcgaccgtgagcacgccgcttacttgggacgaggtgcgcggcgaa
gccgatccgcaagcgttcaccctgcatgcaatcggggaacgcctacagcggatgggcgat
ctgctcgccgcggcggagcctcagaatctcgacgcggtgctggagttcacggccaagcgg
gccgaagcttga
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