Paenibacillus sp. RUD330: CIC07_20205
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Entry
CIC07_20205 CDS
T11330
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prud Paenibacillus sp. RUD330
Pathway
prud03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prud00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIC07_20205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prud03021
]
CIC07_20205 (rpoC)
03400 DNA repair and recombination proteins [BR:
prud03400
]
CIC07_20205 (rpoC)
Enzymes [BR:
prud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIC07_20205 (rpoC)
Transcription machinery [BR:
prud03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIC07_20205 (rpoC)
DNA repair and recombination proteins [BR:
prud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIC07_20205 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ASS68198
UniProt:
A0AAC9VA07
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Position
730485..734114
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AA seq
1209 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDVERELDQLKEELRTAQGQRRNRAIKRLEVIEAFRHSGNKPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEAQGSGSVFGSVNEAVSAYQRGIVSLHARIFIP
AKVLKKDAFTDQQNSSLISTTVGKVIFNEIFPSSFPYINEATKTNLMDGTPDKYFVYEKG
ADLNSFLDNVPQMGAVGKEYLGLLIAECFRQYHTTKTSVILDKIKELGFTYSTRAGITVA
VSDVIVPPEKEEILKQSDEKVKVVTNQYRRGLITNEERYDRVIEIWSKTKDQITEILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYYIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGIMVAKIQDGKEVIEDL
YDRIEGRYSFETIRHPQTGEVIVARNELIDAEKADAIVDAGVEKLQIRSVLSCRARHGVC
KICYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISELDGVVKSIRETKDRREIEVQGEAESKVYPVSYGSRIRVIEGQHLEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIKQMLRKIRI
VDAGDTKLLPGAFVDVHEYEAANREVLLSGREPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIRFVGQEDELETVAAEAE
LSETVPVES
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtgaacaacttcgagtacatgaagatcggccttgcatcgccggagaagatt
cgctcttggtcccgcggagaagtcaagaagccggagaccattaactataggacgctcaag
ccggagaaggaagggctcttctgcgagaagatctttggcccgaccaaggattgggaatgc
cactgcggcaagtacaagcgcgtccgctacaaaggcgtcgtctgcgaccgctgcggcgtt
gaagtcacccgcgccaaagtgcgccgcgagcgcatgggacacatcgagcttgccgctcct
gtctcccatatctggtacttcaaaggaattcctagccggatggggctggctctcgacatg
tcgccccgctcgctcgaggaaatcatctactttgcaagctatgtcgtgacggatccgggc
gaaaccccgctggagaaaaagcagcttctgtccgagaaggaataccgcagctaccgtgaa
aaatacggctatggattccaagccggcatgggcgccgaagccgtcaagaagctgcttcag
gacatcgacgtcgagcgcgagctggatcagctcaaggaagagctgcgcacggcccaaggc
cagcgccgcaaccgcgccatcaagcgtctcgaggtcatcgaggcgttccgccattccggc
aacaagccggattggatgattctcgatgtgctcccggtcattccgccggagcttcgtccg
atggtccagctggacggcggacgcttcgcgacctccgacctcaacgacctgtaccgccgc
gtcatcaaccgcaacaaccgtctgaagcgcctgctcgatctcggcgctcccgacatcatc
gtgcagaacgagaagcgcatgctgcaggaagccgtcgatgccctcatcgacaacggccgc
cgcggccgcccggttacgggtcccggcaaccgtcccctgaaatccctcagccatatgctg
aagggcaagcagggccgcttccgccagaaccttctcggcaagcgcgtcgactactccggc
cgttccgttatcgttgtcggaccgagcctgaagatgtaccaatgcggccttccgaaggaa
atggcgctggagctcttcaagccgttcgtcatgaaggaactggtcaacaaagggctcgcc
cacaacatcaagagcgccaagcgcaaggtcgagcgcgtcagcgccgaggtttgggacgtt
cttgaagaagtcatcaaggagcatccggttctcttgaaccgtgcccctacgcttcacaga
ctcggcatccaggctttcgagccgatccttgtcgaaggacgcgccatcaagcttcacccg
ctcgtatgtacggcctacaacgccgacttcgacggcgaccagatggccgtccacgtcccg
ctgtccgcggaagcgcaggcggaagcccgccttctcatgctggcggcaggcaacatcctc
aaccctaaggacggcaagccggtcgtaactccgtcccaggatatggtcctcggctccttc
tatctgacgatggacaacaaggaagcccaaggatccggctctgtcttcggctccgtcaac
gaagccgtttccgcttaccagcggggcatcgtgtcgctgcatgcgcgcatcttcattccg
gcgaaggtcctcaagaaggatgccttcacggatcagcagaacagctcgctcatctcgacg
acggtcggcaaagtcatcttcaacgagatcttcccgagctcgttcccttacatcaacgag
gctaccaagaccaacctgatggatggaacgccggataaatatttcgtgtacgaaaaaggc
gcggacctgaactccttcctggacaacgtgccgcaaatgggcgctgtcggcaaggaatac
ctcggtcttctgatcgcggaatgcttccgccagtaccacacgaccaagacgtcggtcatc
cttgacaagatcaaggagctcggattcacgtactcgacccgcgcgggcatcacggttgcc
gtctccgacgtcatcgtgccgccggagaaggaagaaatcctgaagcaatccgacgagaag
gtcaaagtcgtcacgaaccagtaccgtcgcggcctgatcaccaacgaagaacgttatgac
cgcgtcatcgagatctggagcaagaccaaagaccagatcaccgaaatcctcatgaaatcg
atggaccgctacaattccatcatgctcatggtggactccaaagcgcggggtaacaaatcg
cagatcacccagctgggcggcatgcggggtctgatggccaacccatccggccgcatcatc
gagctcccgatcaagtcgaacttccgtgaaggcctgacggtactcgagtactacatctcg
actcacggcgcgcgtaaaggtcttgccgataccgccctccgtacagccgactccggttac
ctgacccgccgtctcgtcgacgtcgcccaggacgttatcgtccgcgaggacgattgcggc
acggacaaaggcatcatggtcgccaagattcaggacggcaaggaagtcatcgaggatctg
tacgaccgtatcgagggccgctattccttcgagacgatccgtcatccgcagacgggagaa
gtcatcgttgcccgcaacgagctcatcgacgccgagaaggccgatgcgatcgtcgatgca
ggcgtagagaagcttcagatccgttccgtactgagctgccgcgcccgtcacggcgtctgc
aagatctgctacggccgcaacctggcgaccggcaagcatgtagagatcggcgaagccgta
ggcatcatcgcggcccaatcgatcggcgagccgggaacccagctcaccatgcgtacgttc
cataccggcggcgttgccggcgacgacatcacgcaaggtctgccgcgtatccaggagctc
ttcgaggcgcgtaaccctaaaggccaagcgatcatcagcgaactggacggcgtcgtgaag
agcatccgcgaaacgaaggaccgccgtgagatcgaagttcaaggcgaagccgagtccaaa
gtgtatccggtcagctacggttcccggatccgcgtcatcgaaggccagcatctggaagcc
ggcgacgagctgacagacggctccatcgatccgaaggaaatgctgcgcatcaaaggcatc
cgcggggtacagaactacatcctgcaggaagttcagcgcgtataccggaaccaaggcgta
gaaatcaacgacaagcacgtcgaagtcatgatcaagcagatgctccgcaaaatccgcatc
gtcgatgccggcgacacgaagcttctgcctggcgcgtttgtcgatgtgcatgaatacgaa
gcagccaaccgcgaggtgcttctgtccggccgcgagccggcagtcgccaagccggtcctg
ctcggcatcaccaaggcttccctggagacggattccttcctttccgcggcatccttccag
gaaacgacccgcgtcctgaccgacgctgccatcaaaggcaaggtcgaccagctgctcggc
ctcaaggagaacgtcatcatcggcaagctgatccctgccggtacgggcatgaaccgttac
cgcagcatccgcttcgtcggccaagaggacgaactcgagaccgtagctgcggaagccgag
ctcagcgagacggttccggtcgaatcctga
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