Pendulispora rubella: LVJ94_00930
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Entry
LVJ94_00930 CDS
T10973
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prue Pendulispora rubella
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prue03016
]
LVJ94_00930
Enzymes [BR:
prue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVJ94_00930
Transfer RNA biogenesis [BR:
prue03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVJ94_00930
Prokaryotic type
tRNA splicing ligases
LVJ94_00930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WXB05826
UniProt:
A0ABZ2L4F4
LinkDB
All DBs
Position
complement(219860..221092)
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AA seq
410 aa
AA seq
DB search
MTNATDNGHVTLETTGAPIKAWTVGVPFEAEAEAQLRRVAELPFIHKWVAVMPDVHAGIG
ATVGSVIATKGAIIPAAVGVDIGCGMMATRTTLRASDLPDNLRELRTAIEAAVPHGRTAN
GGPGDRGAWGHLPADVTEAWSALDEGYKWLTDKYPKLDRGASANHLGTLGTGNHFIEVCL
DEADHVWFMLHSGSRGVGNRIGSFFIELAKKDMRTWMVNLPDENLAYLPEGTEHYGDYWK
AVSWAQKFAATNRELMMKAVVSAARGSHLPPFELTDVAVNCHHNYVAREHHYGADVLVTR
KGAVRAAEGDLGIIPGSMGARSFIVRGKGNRESFHSCSHGAGRKMSRTAAKKAFTIEDHE
EATKGIECRKDADVIDETPAAYKSIDDVMHAQSELVDIVHTLRQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgcgacggacaacgggcacgtgaccttggaaacgaccggggcgccgatcaag
gcgtggacggtgggggttcctttcgaggccgaggcggaagcccagcttcgacgcgtggcg
gagctccccttcatccacaagtgggtcgccgtcatgccggacgtgcacgccgggatcgga
gcgacggtcggaagcgtgattgcgaccaagggcgccatcattccggcggcggtgggcgtg
gatatcggctgtggaatgatggccacgcgcacgacgttgcgcgcatcggacctgccggac
aacctgcgcgagctgcgcacggccatcgaggcggcggttccgcacgggcgcaccgccaac
ggcggccccggcgatcgcggtgcgtgggggcatctgccggccgacgtgaccgaggcatgg
agcgcgctcgacgaaggctacaagtggctcaccgacaagtaccccaagttggaccgcggc
gcgtcggcgaaccatcttgggaccttgggcacgggaaatcacttcatcgaagtgtgcctg
gacgaggcggaccacgtctggttcatgctgcattcggggtcgcgcggtgtgggaaaccgc
atcggtagcttcttcatcgagctggcgaagaaggacatgcgcacgtggatggtgaacctt
ccggacgaaaacctcgcgtacttgcccgagggtacggagcactatggcgactactggaag
gcggtaagctgggcgcagaagttcgcggcgacgaaccgcgagctcatgatgaaggccgtg
gtgagcgctgcgcgcgggagccacctgccgcccttcgagttgaccgacgtggcggtgaat
tgccaccacaattacgtggcgcgcgaacaccattatggtgccgacgtgctggtgacccga
aagggcgcggtgcgcgcggccgagggcgacctcggcatcatccccggaagcatgggggcg
cgctcgttcatcgttcgcggcaagggaaaccgtgagagctttcactcgtgcagccacggt
gcggggcgcaaaatgtcgcgcacggcggcgaaaaaggccttcaccatcgaggaccacgag
gaagcaaccaaaggcatcgaatgccgcaaggacgcggacgtcatcgacgagacgcccgct
gcttacaaatcgatcgacgacgtgatgcacgcccagagtgagctcgtcgacatcgtgcat
acgctgcgacaagtcgtatgcgtcaagggatag
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