Pendulispora rubella: LVJ94_04930
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Entry
LVJ94_04930 CDS
T10973
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prue Pendulispora rubella
Pathway
prue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ94_04930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prue03019
]
LVJ94_04930
03009 Ribosome biogenesis [BR:
prue03009
]
LVJ94_04930
Enzymes [BR:
prue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVJ94_04930
Messenger RNA biogenesis [BR:
prue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVJ94_04930
Ribosome biogenesis [BR:
prue03009
]
Prokaryotic type
rRNA helicases
LVJ94_04930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WXB06589
UniProt:
A0ABZ2L6M5
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All DBs
Position
1134342..1136195
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AA seq
617 aa
AA seq
DB search
MNSPDFAELLGPALASAIEQRGFTTLTPVQHAVLDPSLRGRDLRISSQTGSGKTVAIGFT
LREALEAGKDAVAPKNGVAAPLALVITPTRELAKQVDEELSWLYAPQSVKVASVTGGGGY
RDERRAFAQGPAVIVGTPGRLLDHLRRGSIDASAIGTVVLDEADRMLDLGFREELEGILS
FAPTPHTTHLVSATFPRDVRVLADKVQTEPVNVEGTPLGTANADIDHMIHLVSLSERTAA
VINLLLSDPDSKTLVFARMRSEVSELTNELKSAGFHVRSLSGEMEQPERNRALDDFKRGR
LHALVATDVAARGIDVQDISHVIHVEPPTDVDTYTHRSGRTGRAGRKGISSVLTPPAGFA
KTSALLRRAGVTFRVEAIPTADALREQRQERLFTELTSDASGTADADWRCAALAERIVES
GQAAQALTRLLSRVGITGPCEPRDVTPHAPPAERKKLSGPSKAGFGDGPARPRPTRKDHP
ADWVTFRVTWGGLHGANPRRLFAMMCRRGGVQGGDVGAIEIAKTHSFVNIAKAAASSFEE
AARVPDPRDPRVSIHRADGDAPRPKPAAKHHPAAKPHAPAKHHPATHAKPHSGGVKRKSH
AEPKPRADRPSKRQVAR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgcccgacttcgccgagttgctcggccccgcattggccagcgccatcgagcag
aggggcttcacgacgctcacccccgttcaacatgccgttctcgacccgtcgttgcggggc
cgcgatctgcgaatcagttcgcagaccggttccggaaagaccgtggccatcggctttacg
ctccgtgaggccctcgaggccgggaaggatgcggtcgcgccgaagaacggggttgctgcg
ccgctggcgctggtgatcacgcccacgcgcgagcttgccaagcaggtcgacgaggagctg
tcgtggctgtacgcgccgcagtcggtgaaggtggcgtcggtgaccggtggcggcggctac
cgcgacgaacggcgcgcctttgcgcaagggcccgcggtcatcgtggggacgccgggtcgc
ttgctcgaccatctgcgccgcgggagcatcgacgcttcggcgatcgggacggtggttctc
gacgaagcggaccgcatgctcgatctcggtttccgcgaggagctggaagggattctctcg
ttcgcgccgacgccgcacacgacgcacttggtgtcggccacgtttccgcgggacgttcgc
gtgctcgccgacaaggtgcagaccgagccggtgaacgtggaggggacgcccctcggtacg
gccaacgcggacatcgatcacatgatccacttggtgtcgctttcggagcgcacggcggcg
gtgatcaatttgctgctctcggatcccgattcgaagacgctggtgttcgcgcgcatgcgc
tccgaggtgtcggagctgacgaacgagctcaaatcggcgggatttcacgtgcgctcgctg
tccggcgagatggagcagccagagcgaaaccgcgcgctggacgacttcaaacgaggccgg
ctccacgccttggtggccaccgacgtggccgcccgcggcatcgacgtgcaggacatctct
cacgtcatccatgtggagcctccgacggacgtcgacacgtacacgcaccgcagcggccga
accggccgcgccggccgcaaaggcatcagctcggtgctcacacctcccgccggatttgcg
aagacttccgcgctgttgcgtcgcgcgggggtgacctttcgcgtcgaggccatcccgacc
gccgatgcccttcgcgagcagaggcaggagcgccttttcaccgagctcacgtcggacgcg
agtggcacggccgacgccgactggcgctgcgcggccctcgccgagcgcatcgtcgagagc
ggccaggccgcccaggccctcacccgcctgctatcccgcgtgggcatcaccgggccctgc
gagccgcgcgacgtcaccccccacgcgccgcccgcggagcgtaaaaagctgtcggggccg
tcgaaggcgggcttcggcgacgggccggctcggccgcgtcccacgcgcaaagatcaccca
gcggattgggtcaccttccgcgtgacctggggcggcctgcacggggccaatccccgccgc
ctcttcgccatgatgtgccgccgcggcggcgtccaaggtggcgacgtcggcgcgatcgaa
atcgcgaagacgcactccttcgtcaacatcgccaaggcggccgcctcatccttcgaagaa
gccgcccgcgtccccgatccgcgcgatccccgcgtctcgatccaccgcgccgacggcgac
gcccctcggcccaagcccgccgcgaagcaccaccctgccgcgaagccgcacgcccccgcg
aagcaccacccggccacccacgcgaagccgcactcgggcggcgtaaagcgcaagtcccac
gccgagccgaagccgcgcgccgaccgcccctcgaaacgccaagtcgcgcgctga
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