Pendulispora rubella: LVJ94_06050
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Entry
LVJ94_06050 CDS
T10973
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prue Pendulispora rubella
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prue03032
]
LVJ94_06050
03400 DNA repair and recombination proteins [BR:
prue03400
]
LVJ94_06050
Enzymes [BR:
prue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LVJ94_06050
DNA replication proteins [BR:
prue03032
]
Prokaryotic type
DNA Topoisomerases
LVJ94_06050
DNA repair and recombination proteins [BR:
prue03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LVJ94_06050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WXB06795
LinkDB
All DBs
Position
1451320..1452390
Genome browser
AA seq
356 aa
AA seq
DB search
MSNTPSRVSGVVLEALDAAKAAGLRYVSDSSPGIRRVRCGKGARYVAPDGSAVRDPEMLR
RIRGLVIPPAWSKVWIARIANAHIQATGRDAKGRKQYIYHPRWREVRDESKYDKLVAFAR
ALPKIQKTVDMHLAQRGLHREKVLATVVRLLEITRIRVGSEEYARTNGSFGLTTLRGRHV
DIDGGRLSFHFRGKSGKEHVIDVEDRRLARIVAQCSELPGQELFQYVDEAGERHTIESAD
INEYIRSIAGNGFTAKDFRTWAGTVLAARALGELAATVTTKPTKKAITEVVKVVATHLGN
TPAVCRKCYVHPAVFEAFTDGWLGQVLRAKAEEKAVIAIIQRAARGADHRVTRSAA
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaacacaccctcgcgcgtatccggggtcgtcctcgaggcattggacgccgccaag
gccgctggtttgcggtacgtgagcgactcatcacccggcatacggcgcgttcgctgtggc
aaaggggcgcgctacgtggcccccgacggttccgcggtgcgcgatcccgagatgcttcgg
cgtatccgcggcctggtgattccaccggcctggagcaaagtgtggatcgccagaattgcg
aatgcgcatattcaagccacggggcgcgacgccaaaggtcgtaagcagtatatctatcat
ccgcgctggcgcgaggtgcgcgatgaaagcaaatacgacaagctcgtcgcctttgcgcgc
gccctgcccaagatccagaagaccgtcgacatgcaccttgcccagcgcgggctgcatcgc
gaaaaagtcctcgcgacggtggttcgtcttttggagatcacgcgaatcagggtgggcagc
gaggaatatgctcggaccaatggctcgttcgggttgacgacattgcgcggacgtcacgtt
gacatcgacggagggcggctttcgtttcactttcgcggaaagagcggaaaagagcatgtc
atcgacgtggaagatcgccggctcgcgcgcatcgtcgcacagtgtagcgagctgccgggg
caagagctcttccaatacgtggacgaagcgggcgagcgtcacaccatcgagtccgcggat
atcaacgagtacatccgcagcatcgccggcaatggcttcacggcgaaagatttccgcacc
tgggcggggacggtgttggccgcgcgtgctcttggcgagctcgctgctacggtgacgacg
aagccgaccaagaaggccatcaccgaggtcgtcaaagtggtggcgacgcacctcggcaat
acccccgcggtgtgtcgcaagtgctacgtccaccccgcagtcttcgaagcgttcaccgat
ggctggctcggccaagtgcttcgcgcgaaggccgaggaaaaagccgtcatcgccatcatc
caacgcgctgcgcgcggcgccgaccatcgagtcacacgctccgccgcgtga
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