Pendulispora rubella: LVJ94_18445
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Entry
LVJ94_18445 CDS
T10973
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prue Pendulispora rubella
Pathway
prue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ94_18445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prue03019
]
LVJ94_18445
03009 Ribosome biogenesis [BR:
prue03009
]
LVJ94_18445
Enzymes [BR:
prue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVJ94_18445
Messenger RNA biogenesis [BR:
prue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVJ94_18445
Ribosome biogenesis [BR:
prue03009
]
Prokaryotic type
rRNA helicases
LVJ94_18445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
AAA_22
AAA_30
YuA_Gp49
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WXB09202
LinkDB
All DBs
Position
complement(4606160..4608016)
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AA seq
618 aa
AA seq
DB search
MSEEAQTPPPPPTFDVLPLSADVRRAVDALGYVHPTPVQRAVFEPASRGRSLVVQARTGT
GKTAAFGLPIVDQLVRRGHPHVQALILTPTRELALQVSREITHLGQFRGTKVTAIYGGAP
MGKQIDELASGAQVVAGTPGRVLDHLRRGTLDPSHIRIFVLDEADEMLSMGFAKELHAIV
ELLPRERQGLFFSATIPPDIERLAVNQLRDPEFVTLSSDQVGALEINHFVYLVGQSDKRK
ELVRILEVENPESAIIFCNTRDETERVAETLKNQGYDAEWLNGDLEQRERERIMQNTREG
KLRFLVATDVAARGIDISHLTHVINADFPESAEYYVHRTGRTGRAGKTGTAISLVGPKNI
GALYILRLTYKIRPIEKQLPSAAELKTRSEHDLITMFVEAFKAQAHPDDLALARRLLTHA
DVEPIVAGLLRAHLGAREEAGENPRQDAAEARRAKNPTKIESAPAAAPAAGARRGGARTG
RSELRRHGTSSPVRDDVEVARYTVTDPRVDLAPVTLATPSEPPPSPSAEPSENGANEEFA
RIFVNVGRRDGVGPLDFHRMLFEGAGLSQKDVGPIHVRDRISFVSVRREWLDKSVAALAG
QVVGGRSIVAEPARERGA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaagaagctcaaacgcctcccccgccgcccacattcgacgtcctgcccctgagc
gccgacgtgcggcgtgcggtcgatgccctcggttacgtgcatcccacgcccgtgcagcgc
gccgtgttcgagccggcctcgcgcggccgcagcctggtggtgcaggcgcggaccggcacc
ggcaagacggcagccttcggcctgcccatcgtcgatcagctggtgcgacgcggccatccg
cacgtgcaagcgctcatcctcacgccgacgcgcgagctggccctgcaggtctcccgcgag
atcacgcacctcggccaattccgtggcaccaaggtcaccgccatctacggcggcgctccc
atgggcaagcagatcgacgagctagcctccggggcgcaagtcgtggccggcaccccgggc
cgcgtgctcgatcacctgcggcggggaacgctcgacccgagccatatccgcatcttcgtg
ctcgacgaggccgacgagatgctctccatgggcttcgccaaggagctgcacgccatcgtc
gagcttctgccccgcgaacggcagggcctgttcttcagcgcgaccatcccgccggacatc
gagcgcctcgcggtcaaccaactgcgcgatcccgagttcgtcacgctctcgagcgaccag
gtcggcgccctcgagatcaaccatttcgtgtacctggtcgggcagagcgacaagcgcaag
gagctcgtgcgcatcctcgaggtggaaaaccccgagagcgcgatcatcttctgcaacacg
cgcgacgagacggaacgcgtggccgagacgctgaagaaccagggctacgacgccgagtgg
ctcaatggagacctcgagcagcgcgagcgcgagcgtatcatgcagaatacacgcgagggg
aagctgcgcttcctcgtcgcgacggacgtggccgcgcgcggtatcgacatttcgcacctc
acgcacgtcatcaatgccgacttccccgagagcgccgagtactacgtgcaccgcacgggc
cgcaccgggcgcgcggggaagacgggcacggccatctcgctggtcgggccgaagaacatc
ggtgcactgtacatccttcggctgacgtacaagattcgccccatcgagaagcagctcccc
tcggcggcggagctcaagacccgctccgagcacgatctcatcacgatgttcgtcgaggcc
ttcaaggcccaggcgcacccggacgatctcgcgctcgcgcgaaggctcctcacccacgcg
gacgtcgagcccatcgtcgcggggctgctccgtgcgcacctcggcgcgcgtgaagaggcc
ggtgagaatccccggcaagatgcggcggaagcgcggcgcgcgaaaaatcctacgaagatc
gaatcggcaccggcggcagcaccggcagcgggcgcgcgccgcggtggcgctcgcacgggt
cgctccgaattgcgccggcacggcacatcttcgcccgtgcgcgacgatgtcgaggtcgcg
cgatacacggtgaccgatccgcgtgtcgacctcgcgccggtcacgctggccaccccctcg
gaaccgccgccctcaccttcggcggagcccagcgaaaatggtgcgaacgaggagttcgcg
cgcatcttcgtgaacgtggggcggcgcgatggcgtcggaccgctcgacttccaccgcatg
ctcttcgagggcgccgggctatcgcagaaagacgtcggccccatccatgtgcgcgatcgc
attagtttcgtgagcgtgcggcgcgagtggctcgacaagtcggtcgcagcgctcgccggt
caggtcgtcggcggtcgcagcatcgtggcagagcctgcgcgcgaacgcggcgcctga
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