Pendulispora rubella: LVJ94_30145
Help
Entry
LVJ94_30145 CDS
T10973
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prue Pendulispora rubella
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prue03032
]
LVJ94_30145 (topA)
03400 DNA repair and recombination proteins [BR:
prue03400
]
LVJ94_30145 (topA)
Enzymes [BR:
prue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LVJ94_30145 (topA)
DNA replication proteins [BR:
prue03032
]
Prokaryotic type
DNA Topoisomerases
LVJ94_30145 (topA)
DNA repair and recombination proteins [BR:
prue03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LVJ94_30145 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WXB01168
LinkDB
All DBs
Position
7775502..7778018
Genome browser
AA seq
838 aa
AA seq
DB search
MAKTLVVVESPAKAKTIKKYLGAHYEVVASKGHVKDLPKKLGINIENGFEETYEVIAGKE
KVLAELKTAAKNVEEVLLATDPDREGEAIAWHLAEELGGSKKVTKRVEFHEITKAGVQRG
VDSPRELNKQLYDAQRARRVLDRIVGYDVSALVWSKLAFGLSAGRVQSVALRLIVDRERE
IEAFVPVEYWNTSVGLSKAAGAKTPFISRLTTRDGKKFAVENAENADVVRGHLKSAAYTI
AKITRSERKRKAPAPYTTSKLQQDAVNRLGFGAKRTMQVAQGLYEGVDLGKDGGPVGLIT
YMRTDSTRLSPEAVGACRDRIEQVYGKEYLPANPPVFKSKKGAQDAHEAIRPTSLELSPE
TVRKHLKEEQFKLYKLIWDRFVACQMKEAVYDQTGVDIEAAVSGGPTYGLRASGRVLKFP
GWLAAVGEGGGKGELAGEEEADEAAKAAALKPDAEAASDDEASLPELSEGEKLKIVDPPG
VLTEQKFTQPPPRYNEGSLVRELEDRGIGRPSTYAEIISKVQARDYVEKLDNRFRPTTLG
MYVVDGLVRSELDFMDPAFTSSMEEQLDEVEAGNEDRVVLLSRFYKRFRKQLDEGKKQKR
WNPEPEPTGEICDVCNEGEMMKRWSKNGWFLGCANYPKCKNTRDLGPDGKGTQVRETDVI
CDKCTKPMVIRSGRYGEFLSCTGYPGCKNAKPVPLGVPCPKCGGDLIEVRPKKKGGKTFY
GCSNYNHETLKCDFKLWQKPIQSPCPDCGAAFLVMGGTKAKPMIACANKECGYKRSPDAP
EPEVANSVTTDANGSTVSSEPPGGNAEEEVASKTRPSGPAGKLPSADGIAVARAVSQS
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacgctcgtagtcgtcgagtcgcccgccaaggcgaagacgatcaagaagtac
ctgggggctcactacgaggtcgtcgcatcgaagggccacgttaaggatctgcccaaaaag
ctgggcatcaatatcgagaacggtttcgaagagacgtacgaggtcatcgccggcaaggag
aaggtcctggccgaactgaagaccgcggccaaaaacgtcgaagaagtcctgctcgcaacc
gaccccgaccgtgaaggcgaagcgattgcgtggcacttggccgaggagttgggcggcagc
aagaaagtcacgaagcgcgtcgagttccacgagatcaccaaggccggtgttcaacgcggt
gtcgactcgccgcgggagctgaacaaacagctctacgatgcgcaacgcgcacgccgcgtc
ctcgatcggatcgtgggctacgacgtgtcggcgctcgtgtggtccaagctggcgttcggg
ctgagcgcgggccgcgtgcagagcgtggcgctgaggctcatcgtcgaccgcgagcgcgag
atcgaagcgttcgtccccgtcgaatattggaacaccagcgtcggcctctccaaggccgcg
ggtgcgaagacaccgttcatctcccgcctcacgacgcgcgacgggaagaagttcgccgtc
gagaacgcggagaacgcggacgtcgtgcgtggccacctgaagtcggccgcgtacaccatc
gcgaagatcacgcgttcggagcgaaagcgaaaggcccccgctccgtacaccacgagcaag
cttcaacaggacgcggtgaaccgcctcggcttcggcgccaagcgcaccatgcaggtcgcg
cagggcttgtacgaaggtgtggatctcggcaaggacggcggtcccgtcggtctcatcacg
tacatgcgtaccgactccacgcgcctgtcgccggaggcggtgggagcgtgccgtgatcgc
atcgagcaggtttacggcaaggagtacctgcccgcgaacccgcccgtcttcaaatcgaag
aagggcgcgcaagatgcgcacgaagccatccgcccgacgagcctcgagctttcgcccgag
acggtgcgaaagcacctcaaggaagagcagttcaagctctacaaattgatctgggatcgc
ttcgtcgcctgccagatgaaggaagccgtctacgatcagacgggcgtcgacatcgaggct
gcggtgagcggcggtccgacgtacggactgcgcgcgagcggtcgcgtgctcaagttcccc
ggctggcttgcagcggtcggcgagggcggaggcaagggcgagctcgccggcgaagaagaa
gccgacgaggcggcgaaggccgcagcgctcaagccggatgccgaagcggcatcggacgac
gaggcctcgctgcccgagctgtccgagggcgagaagctcaagatcgtcgacccgccgggc
gtgctcacggagcagaagttcacgcagccgccgccgcgctacaacgaaggctcgctcgtg
cgcgagttggaagatcgcggcatcggccgcccgagcacgtacgccgagatcatcagcaag
gtgcaggcgcgcgactacgtcgagaagctcgacaaccgcttccgccccaccacgctcggc
atgtacgtggtcgatggcctcgtgcgcagcgagctcgatttcatggacccggccttcacc
tccagcatggaggagcagctcgacgaggtcgaggcaggcaacgaagaccgcgtggtgctg
ctgtcgcgcttctacaagcgcttccgaaagcagctcgacgaggggaagaagcaaaagcgc
tggaatcccgagccggagccgacgggcgagatctgcgacgtctgcaacgaaggcgagatg
atgaagcgctggtcgaagaacggatggttcctcggctgcgcgaactaccccaagtgcaag
aacacgcgcgacctcgggcccgacggcaaaggcacgcaggtccgcgagacggacgtcatc
tgcgacaagtgcaccaagccgatggtgatccgcagcggccgatacggcgagttcctctcg
tgcacgggttaccccgggtgcaagaacgcgaagcccgtgccgctgggcgtgccttgcccc
aagtgcggtggagacctcatcgaggtccgtccgaagaagaagggcgggaagacgttctac
ggctgctcgaattacaatcacgagacgctgaagtgcgatttcaagctctggcaaaagcca
attcagtcaccctgccccgactgcggtgcagcgttcttggtgatgggcggcacgaaggcc
aaaccgatgatcgcttgtgccaacaaagagtgcggctacaagcgctctccggatgcgccg
gagccggaagtggcaaactcagtgaccactgacgcgaacggatccacggtgtcgagcgaa
cctcctggcggaaatgccgaagaggaggtcgcctcaaaaacgcggccatcgggccctgca
ggcaagctgccgagcgcggatggcattgccgtcgcgcgcgctgtcagccagagctaa
DBGET
integrated database retrieval system
