Pendulispora rubella: LVJ94_47430
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Entry
LVJ94_47430 CDS
T10973
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
prue Pendulispora rubella
Pathway
prue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ94_47430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prue03019
]
LVJ94_47430
Messenger RNA biogenesis [BR:
prue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVJ94_47430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
RNase_J_C
YbaB_DNA_bd
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
WXB04522
UniProt:
A0ABZ2L0S9
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Position
complement(12219631..12221292)
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AA seq
553 aa
AA seq
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MLRVFPLGGLGEIGMNCLALEQRGQVLLIDCGITFDDRGLGIDVVHPDFTALDAYRDRIA
GVFITHGHEDHIGALPYLLKRYDVPVWGPRYALGLVRERLGEHEVLAHARLIETKARTRV
TVGSFEVEPVRVTHSIADATALAIRTDAGLVVHTGDFKFDENPPDGEAFDEERLRELGDE
GTALLFSDSTNVDSEGGSGSEQTVGDALETIVAQASSAVVVALFASNVHRLRMLGDIARR
TGRRIVPLGRSILTHTRVAHDTGYLAWPSDLLFPQERVNELPRNTILGLATGTQAEGRAA
LARLARGEHPYLKLEPGDVVALSSRIIPGNEPEVYAVMGDLLRRGVVVRTRGTDRNIHVS
GHAHRGEQRRMLELVRPKTFIPVHGTIHHLMRHGELARECGVPDVCVIENGDVVELARDA
DRPYLTRRERVPVGRVATFAGRPLAAQALRERAWLAESGCAFVVVSLTARGTLRAVKILT
RGVVDEALDRNVIVRAERDAAAAVDEELARLAKLGGADDNAILEAARLGTRKSFYKALGF
KPLTTVSVHRESP
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgtctttccgcttggcgggctcggcgaaattggcatgaattgcctggccttg
gagcaacggggccaggtgttgctcatcgactgcggcatcaccttcgacgaccgcggcctc
ggcatcgacgtggtgcaccccgacttcacggccctcgatgcgtaccgcgatcgcattgcc
ggcgtgttcatcacccacggccacgaagatcacatcggcgccctgccctacctgctcaag
cgctacgacgtgcccgtgtggggtccccgctacgcgctggggctggtgcgcgaacggctc
ggcgagcacgaggtgcttgcgcacgcgcggctcatcgaaacgaaggcgcgcacgcgcgtg
acggtgggctcgttcgaggtggagccggtgcgggtcacgcactccatcgcggatgccacg
gcgctggccatccgcaccgatgccggcttggtcgtgcacaccggcgatttcaagttcgac
gagaacccgcccgatggagaagccttcgacgaggagcgcctgcgcgagctcggcgacgag
ggcaccgcgctgctcttttccgattcgaccaacgtcgactccgagggaggctcggggagc
gagcaaaccgtgggcgacgcgctggagaccatcgtggcgcaggcctcgagcgcggtggtg
gtggcgctgtttgcctcgaacgtgcaccgcctgcgcatgctgggcgacattgcccggcgc
accggccggcgcatcgtgccgctcgggcgaagcatcctcacgcacacgcgggtggcccac
gacacgggctatctggcctggccgagcgatctgctgttcccgcaagagcgggtgaacgag
ctgccgcgcaacacgattttgggcttggccacgggcacgcaagccgaggggcgcgcggcg
ctggcgcggctggcccgcggcgagcacccgtatttgaagctggagcccggcgacgtggtg
gcgctctcgagccgcatcatcccgggcaacgagccggaggtgtacgccgtgatgggcgac
ctgctccggcgcggtgtggtggtgcgcacgcgcggcacggatcggaacatccacgtgagc
gggcatgcccaccgcggcgagcagcgacgcatgctcgaactggtgcgcccgaagacgttc
atccccgtgcacgggacgattcatcacttgatgcgccacggggagctggcccgcgaatgc
ggcgtgcccgacgtgtgcgtcatcgaaaacggggacgtggtggagctcgcgcgggacgcg
gatcgcccgtacctgacccgacgcgagcgcgtgccggtgggccgtgtggccacgttcgcc
gggcgcccgctggccgcacaggccctccgcgagcgggcatggctcgccgagtcgggttgc
gccttcgtggtggtgtcgctcaccgcccgtggcaccttgcgcgcggtgaagatcctgacc
cgcggcgtggtggacgaggcgctcgaccgcaacgtgatcgtgcgggccgagcgcgatgcc
gcggccgccgtggacgaggagctggcgcgcctggccaagctgggcggcgccgacgacaac
gccatcctcgaggccgcgcgcctcggcacccgaaaaagcttctacaaggccctgggcttc
aaacccctcaccaccgtatccgtccaccgcgagtcgccgtga
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