KEGG   Pendulispora rubella: LVJ94_47430
Entry
LVJ94_47430       CDS       T10973                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
prue  Pendulispora rubella
Pathway
prue03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:prue00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LVJ94_47430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prue03019]
    LVJ94_47430
Messenger RNA biogenesis [BR:prue03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LVJ94_47430
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 RNase_J_C YbaB_DNA_bd Lactamase_B_3
Other DBs
NCBI-ProteinID: WXB04522
UniProt: A0ABZ2L0S9
LinkDB
Position
complement(12219631..12221292)
AA seq 553 aa
MLRVFPLGGLGEIGMNCLALEQRGQVLLIDCGITFDDRGLGIDVVHPDFTALDAYRDRIA
GVFITHGHEDHIGALPYLLKRYDVPVWGPRYALGLVRERLGEHEVLAHARLIETKARTRV
TVGSFEVEPVRVTHSIADATALAIRTDAGLVVHTGDFKFDENPPDGEAFDEERLRELGDE
GTALLFSDSTNVDSEGGSGSEQTVGDALETIVAQASSAVVVALFASNVHRLRMLGDIARR
TGRRIVPLGRSILTHTRVAHDTGYLAWPSDLLFPQERVNELPRNTILGLATGTQAEGRAA
LARLARGEHPYLKLEPGDVVALSSRIIPGNEPEVYAVMGDLLRRGVVVRTRGTDRNIHVS
GHAHRGEQRRMLELVRPKTFIPVHGTIHHLMRHGELARECGVPDVCVIENGDVVELARDA
DRPYLTRRERVPVGRVATFAGRPLAAQALRERAWLAESGCAFVVVSLTARGTLRAVKILT
RGVVDEALDRNVIVRAERDAAAAVDEELARLAKLGGADDNAILEAARLGTRKSFYKALGF
KPLTTVSVHRESP
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgctgcgcgtctttccgcttggcgggctcggcgaaattggcatgaattgcctggccttg
gagcaacggggccaggtgttgctcatcgactgcggcatcaccttcgacgaccgcggcctc
ggcatcgacgtggtgcaccccgacttcacggccctcgatgcgtaccgcgatcgcattgcc
ggcgtgttcatcacccacggccacgaagatcacatcggcgccctgccctacctgctcaag
cgctacgacgtgcccgtgtggggtccccgctacgcgctggggctggtgcgcgaacggctc
ggcgagcacgaggtgcttgcgcacgcgcggctcatcgaaacgaaggcgcgcacgcgcgtg
acggtgggctcgttcgaggtggagccggtgcgggtcacgcactccatcgcggatgccacg
gcgctggccatccgcaccgatgccggcttggtcgtgcacaccggcgatttcaagttcgac
gagaacccgcccgatggagaagccttcgacgaggagcgcctgcgcgagctcggcgacgag
ggcaccgcgctgctcttttccgattcgaccaacgtcgactccgagggaggctcggggagc
gagcaaaccgtgggcgacgcgctggagaccatcgtggcgcaggcctcgagcgcggtggtg
gtggcgctgtttgcctcgaacgtgcaccgcctgcgcatgctgggcgacattgcccggcgc
accggccggcgcatcgtgccgctcgggcgaagcatcctcacgcacacgcgggtggcccac
gacacgggctatctggcctggccgagcgatctgctgttcccgcaagagcgggtgaacgag
ctgccgcgcaacacgattttgggcttggccacgggcacgcaagccgaggggcgcgcggcg
ctggcgcggctggcccgcggcgagcacccgtatttgaagctggagcccggcgacgtggtg
gcgctctcgagccgcatcatcccgggcaacgagccggaggtgtacgccgtgatgggcgac
ctgctccggcgcggtgtggtggtgcgcacgcgcggcacggatcggaacatccacgtgagc
gggcatgcccaccgcggcgagcagcgacgcatgctcgaactggtgcgcccgaagacgttc
atccccgtgcacgggacgattcatcacttgatgcgccacggggagctggcccgcgaatgc
ggcgtgcccgacgtgtgcgtcatcgaaaacggggacgtggtggagctcgcgcgggacgcg
gatcgcccgtacctgacccgacgcgagcgcgtgccggtgggccgtgtggccacgttcgcc
gggcgcccgctggccgcacaggccctccgcgagcgggcatggctcgccgagtcgggttgc
gccttcgtggtggtgtcgctcaccgcccgtggcaccttgcgcgcggtgaagatcctgacc
cgcggcgtggtggacgaggcgctcgaccgcaacgtgatcgtgcgggccgagcgcgatgcc
gcggccgccgtggacgaggagctggcgcgcctggccaagctgggcggcgccgacgacaac
gccatcctcgaggccgcgcgcctcggcacccgaaaaagcttctacaaggccctgggcttc
aaacccctcaccaccgtatccgtccaccgcgagtcgccgtga

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