Pyrgilauda ruficollis (rufous-necked snowfinch): 121348614
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Entry
121348614 CDS
T07608
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121348614 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121348614 (PRPF6)
Spliceosome [BR:
pruf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121348614 (PRPF6)
Complex C
U5 SnRNP specific factors
121348614 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
121348614
NCBI-ProteinID:
XP_041314274
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGCGLNTPYPGGLNTPYPGGMTPGLMTPGTGEL
DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL
KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA
KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED
ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG
NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVAMCQAIMRAVIGIGIEEED
RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ
RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEY
ERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQI
EEQKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPD
LWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCE
HDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVR
KRCENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacgggcttcaccacccgctctgacattggccctgcccgcgatgcc
aacgaccccgtggacgaccggcacgccccgccgggcaagagaaccgtgggggaccagatg
aagaagaaccagactgcagatgacgatgatgaggatttgaatgacaccaactacgatgag
ttcaatggctacgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaagaa
gcagatgctatttatgcagctttggacaagaggatggatgaacgcaggaaggagaggagg
gaacaacgagaaaaagaggaaatagaaaagtaccgtatggagcgacccaaaattcaacag
cagttctcagacttgaaacggaaattagcagaggttactgaggaggagtggctgagtatt
cctgaggtcggggatgccaggaacaagcggcagaggaatcctcgctatgagaagctgact
cctgtccctgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttcagtg
gacccacgccagactcaatttggtggatgtggactgaatactccgtatccagggggtttg
aatactccatacccaggagggatgacaccaggcttgatgacacctgggacaggtgaattg
gatatgaggaagattggccaagccaggaacaccttgatggatatgaggctaagccaggtg
tcagactctgtgagtggccagactgtagtggacccaaaaggatatttgacagatttgaat
tccatgattcccacacatggaggagatatcaatgatatcaaaaaagcccgtttgcttctg
aaatccgtccgagagaccaatcctcatcatccgccagcctggatagcatcagcccgactg
gaggaggtcactggcaagctccaggtggctcgaaacctcatcatgaaaggaacagagatg
tgccctaagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagcc
aaggctgttgtggcccaggctgtgcggcacctgccgcagtcggtgcggatctatatcaga
gcagcagagctggagacagacatccgtgccaagaaacgtgtcctcaggaaagcccttgag
catgttccaaactcggtgcgtttgtggaaagcagccgtggagctggaggaacctgaggat
gccaggatcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctg
gcgctggcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggag
aatatcccgaccgatcgtcacatctggatcactgctgccaaactggaggaagccaatgga
aacacccagatggtggagaaaatcattgacagagccatcacatctctcagggctaacggg
gtggaaatcaacagggagcagtggatacaggatgccgaggaatgtgataaagctggaagt
gtggccatgtgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagat
cggaaacacacctggatggaagatgcagacagttgtgttgctcataatgccctggagtgt
gcccgagccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctg
cgagcagcctactttgaaaagaaccatggaaccagggaatccttggaggctcttttgcag
agagctgttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaaatccaag
tggctggcaggagatgtgccagcagccagaagcatcttggccttggctttccaggccaac
cccaacagcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtat
gaaagagcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttc
atgaagtctgtgaagttggagtgggtgcttgggaacattgctgcagcccaggagctctgt
gaggaagccctgaagcactatgaggacttccccaaattgtggatgatgaaaggacaaatt
gaggaacaaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaag
tgtccccattccatacccctgtggcttttgctgtccagactggaggagaaagttgggcag
ctgactagagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagat
ctctggttggagtctgtgcgcttggagtaccgggctgggctgaagaacattgcaaacaca
ctgatggccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaatt
ttccttgaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaa
catgacccacacgtcctgctggctgtggccaagctgttctggagcgagcggaaaataacc
aaggccagagagtggttccaccgcacagtgaagatcgactctgacctgggggatgcctgg
gccttcttttacaaatttgagctccagcatggcacagaggagcaacaagaagaggtgagg
aagcgctgtgagaatgccgaacctcgccacggagagctctggtgtgatgtctccaaggac
atagagaactggcagaaaaagattggagagattcttgtgcttgtggcagccaagctgaaa
aataccttctag
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