Pyrgilauda ruficollis (rufous-necked snowfinch): 121348756
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Entry
121348756 CDS
T07608
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pruf03036
]
121348756 (CHD9)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121348756 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
121348756
NCBI-ProteinID:
XP_041314541
LinkDB
All DBs
Position
Unknown
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTTLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPSSELGQAPSQTQIHPWHSSVSNQHLQGRSRATLQGQP
PSKKTDGSGSYTKLQNTQVRAMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNIP
RVMSPENFPSVSAEGKEEKKGRKVKSKPKDKETKKPKTGSSSKIKEKTKIGKLIITLGKK
QKRKNESSDELSDAKQTPQRPVKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGEEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPVQSSMMQLPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNLFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFE
DTKAKNENLKEDPQSSEEESMSTEETQTILKSEPLSPKNGTPIQITDHRPSVKAETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGAPHIKAYDEESVA
SLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRSYDSTTVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGMSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFP
KSLPKSGTSSHLTASANGVILDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINS
CQVAAGINPALSYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAASAASVSVNPLLANGLLPGVDLPSLQALQQNLQSLQSLQVTAGLMGMPAGLAAA
GEAKNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTESVSEEKKGNDSKETDAKKERTEDQN
TDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFD
VQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggcagtcctatgtggggtcatcaaactgccacaactgtttcgaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcag
agcaggaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagttaat
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaatagtcaacaattttcatctccgtattcctactctaataatcacatttctcctacc
agccttcttcagcctacaacagccctctctactagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaaccgagcac
atgttgaatcctaacacaactttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcgaaactctctcctgtgaatattaattttccagcttct
actggttctgcttctcagataagccatttcaccgaccctattgaaagcaacggttttaca
tctttagatgacaacttacttcatcaagtggagactcacagtgaaccattcacaggactt
gacccagatgacctcctgcaggaagaccttctgccacagttcgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaacaccacataaccccacagcag
gtgacaccgtcatccgaacttggtcaggcaccgtctcaaacccagatccatccttggcat
tcttcagtttctaatcagcacctgcaaggcagaagtcgtgcaaccttacaaggacagcct
ccttccaagaagactgatggttcaggatcctatactaagttgcagaatacccaggtgagg
gcaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaaggca
aatcgcataatatctgaagcaattgcaaaggcaaaagagagaggagagagaaacattcca
cgagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaagaag
ggtagaaaagttaaatccaaaccaaaggataaggagaccaaaaagccgaaaactggttcc
tcatccaaaattaaagagaaaacaaaaattggaaagctgatcatcaccctgggcaaaaag
cagaaaaggaaaaatgaatcttcagatgaattgtctgatgctaagcagactccacagcgg
ccagtgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaaaaa
tatgctgaagaaggagaagggaaacaatcagaagaagaagcagctaaagtttctgttaaa
atcaagaagaattctgcccctttacctgctgagcagcctttacaattatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttgtcctccagggtaataaagaaa
gaaatatctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttttttgcagatatg
gaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtgtctctt
tgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcgaggagattggaccgaccacctccaaac
tcctggaagaagatagaacagtccagggaatataagaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctattcaactggtacaataggcgaaattgcatttta
gcagatgaaatgggccttggcaaaaccattcagtccattacgttcctgtatgaaatcctc
ctgactggtattagaggccctttcctgatcatagctccgctttccaccataacaaactgg
gagagggagttccgcacgtggactgacctgaacgtcgtggtgtaccacggcagtatgatc
agcaggcagatgatccagcagtatgagatgtacttcagggactcccagggccgtattgtt
cgaggcacctacaggttccaggccattatcacaaccttcgaaatgatccttggtggctgt
ccagaattaaatgcaattgagtggcggtgtgttattattgatgaagctcacagactgaag
aacaaaaactgcaaacttttggaaggactaaaattaatgaaccttgagcataaagtgcta
ttaacaggtaccccactgcagaacacagtagaagaattatttagcctccttcattttctg
gaaccattgcgttttcctgctgaatctacattcatgcaggagtttggagaccttaaaaca
gaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagattaaaa
gaagatgtagaaaaaaagctggctcctaaggaggaaaccataatagaagtagaactaact
aatattcagaagaaatattaccgagcaattttggagaaaaattttgccttcttatccaaa
ggagcagggcaggcgaatgtacccaatctggttaacactatgatggagctcagaaagtgt
tgtaatcacccttatctcatcaaaggtgctgaagagaagatccttggagagtttaaagaa
acatacagtccaagtgctcctgacttccacctgcaagcaatgatccagtctgctggtaaa
ttggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtccttatc
ttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaaggtac
ctgtacgagcgcatcgacgggcgcgtgcgggggaacctccggcaggctgccatcgaccgc
ttcagcaaacctgactcggatcgcttcgtcttcctcctctgcaccagggctgggggcctg
ggcatcaacctgactgcagcagatacctgcatcatttttgattctgactggaatccccaa
aatgacctgcaggctcaagcccgatgccataggattggtcagaacaaagcagtgaaggtc
tacaggctgataacacgtaattcctatgagagagagatgtttgacagagcaagtctgaaa
ctgggactggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctccaaaaaagaaatagaagacttgcttcgaagaggtgcctatggtgcc
attatggatgaggaggatgaaggctccaagttctgtgaggaagacattgaccagattctg
cagcgtcggactaaaaccatcacgatcgagtccgagggaagaggctccacgtttgccaag
gctagttttgttgcatctggaaacaggactgatatttcactagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaattgatattgatgctatcagtggtagaaacagcctt
gtcattgataccccaagaatcaggaagcaaacacggcccttcagtgctaccaaggatgag
ctggcagagctgtctgaggtggagagtgagggtgaggagaagccaaagctccgccggcca
tgtgaccgctccaatggctatggaaggacagagtgcttccgagtggagaagaacttgctg
gtctacgggtggggccgatggagagaaattctgtcccatggccgcttcaagaggcagctg
aatgagcaggatgtggagatcatttgcagagccctgttagcctattgccttgttcactac
agaggggatgagaaaataaagagttttatatgggatctcatcaccccaacagaggatggg
caaacacgagagttacagaaccaccttggcttatcagcccctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagctgaatggcttcga
aaatacaatccagagcatctgttgcaagatgaaggatacaaaaagcacataaaacaccat
tgcaacaaagtcttacttcgagtaagaatgctatattacttaaagcaagaagtcattggt
aatgaattccaaaaggtctttgatggaactgatgccagtgaaattgatgtttgggttcct
gagccagaccactctgaagttcctgctgagtggtgggatgcagatgcagataaatctctt
ctaataggagtttttaaacatggttatgaaaaatacaacactatcagagcagacccagct
ctttgcttcttggaaagggttggaaaacctgatgagaaagcagttgctgctgaacagaga
gcaaatgattatatggatggggatgtagaagatccagagtataaaccagcaccagcactg
tttaaagatgacatagaggatgatgtttcatccccaggtgatcttgtaatagcggatgga
gatggacaaatgatggaaggggacaaaatctattggcccactcagtctgccttaacaacg
cgtctgcgccgcctgatcaccgcttaccaacggacgagtaaaaacaggcaggcccagcag
atccagccagcattcccagtacaaagcagtatgatgcagctgccatacgaagaagctgca
ctaaatccaaaaatggctgccaagattgaaagacagcaaagatggacaagaagagaagaa
gctgacttttacagagttgtgtccacatttggagtggtgtttgaccctgaaaggggacgc
tttgactggaccaagtttcgagcaatggctcggctgcacaagaaaactgatgagagcctg
gagaagtacctgtatgcatttatgtcaatgtgcaggagggtctgtcgcctcccctctaaa
gaagaacttgtggacccaaacctttttatccagcccatcacagaggagcgtgcttcccgg
acattgtaccgcatcgagctcctgcggaaagtgcgggaacaggctctcaggcacccccag
ctgtttgagaggctaaagctgtgccagccaaacccagacctgcctgtctggtgggagtgt
gggactcacgacagggatctgcttattggagctgctaaacacggagtcagcaggacagat
taccatattcttcgtgatcctgaactctcatttatgtctgcccagaggaactataatcaa
aacaaagtggctctctcaaggacttctactccactcttgcaccagtaccagatggcatta
tctgcttctcctcttacacctcagtcaagactgtcagatgctaaagtgaatgcctttgag
gacacaaaagctaaaaatgaaaatctgaaagaggaccctcagtcttctgaagaggagtct
atgtctacagaggagacacagacaatactgaaatctgaacctttgagtcccaaaaatggc
accccaatacaaattacagaccacagacctagcgtgaaggctgagacagacaggcgcatg
gtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagggggtctgactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcatcttcatcctcttcgtcttcttcatcttgttcccactctcgatctggc
tctagctcttcatcatcctcatcttgttcttcagcatcttcatcgtcctcctcgtcgtcc
tcatcatcatcgtcgtcatcatcatcatcgtctgaagagagtgatagtgatgaagaggag
gcacaaaaacgtgcagaaggagctccacatataaaagcctatgatgaagagagtgtggcc
tctctgagcaccacacaagatgagacacaagacagtttccagatgaacaatgggacacca
aattctggttatctcctacaaggtggatacatgctggctgcatcctactggccaaaggat
cgagttatgattaaccgactggacagcatttgtcagacagtgctgaagggtaaatggcct
tcagcccgaaggagctacgacagcaccacagtggcatcgttctacaccaccaagctcctg
gacagctcaggggcagctgcagagtacagtgagcccagtgcacccacaccccctctggca
gctgtaaaagaagaatatgaccaatcaccccagctgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggaatgtctcagaaaaggccgtttgaaagcgaggagggtgcattgggtcagcagcaa
tatctggctcggctacgcgaactccagaatgcttcagaaaccagccttgtcaacttccca
aaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagtcatc
cttgacagtcagcctgtagtcaaaaagagacgaggaagaaggaagaatgtggagggggtt
gatgtcctctttatgaatagaaataaacagcctaaccatgttaatccaggtattaactcc
tgccaggttgctgcaggaataaacccagcactcagttacacacagtcccaaggcatgctc
gatgcagagagcccagttcctgttattaacctaaaggatggaacaaggcttgcaggtgat
gatgcccctaaaagaaaagatttagaaagatggcttaaagaacatcctggatatgttgaa
gattcaggagcttgtattcctaggatgcagctgcacgatgggagacccaaacaaaaaaga
caccgttgtcgaaaccccaataaactggatgttaacagtttgactggtgaagaacgtgtt
cagctcataaatagaagaaatgcaagaaaggttggaggtgcatttgctccccctctgaag
gatttgtgcaggttcttgaaagaaaatccagaatatggagtggctcctgagtggggagag
gtggtaaaacagtctggcttcctccccgaaggaatgtttgaccgcatcctgacgggcccg
gtggtgcgggaggaggtgagccgcaggggcaggcgccccaagagcgagatcgccaaggcc
acggcggctgcggccgccgcctcggccgccagcgtgtccgtgaaccccctgctggccaac
gggctgctgccgggagtggacctgcccagcctccaggccttacagcagaacctgcagagc
ctgcagtcgctgcaggtgacggccggactgatgggaatgccggctggcctcgctgccgcg
ggagaggccaagaacgtggctgccatgttccccatgctgctgtcagggatggccgggttg
ccaaacctgctgggcatgggaggactcctgacaaagtccacagaatccgtttcggaggag
aaaaagggaaacgattcaaaggagacagatgcaaagaaggaaaggacagaagaccaaaac
acggatactggtggtgaaaactctgtttcgagttctccttcgacatcctctgccgctgca
gctgccaatcctctctctcttaaccctttacttttgtccaacatactttacccagggatg
cttctcactccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgat
gtacagaacagtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggaggaa
aattctagggttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaa
aacagcacagatgagggttcagagaaagcagatgcttcatctggatctgacagtacatcg
tcttcatctgaggattcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
