Pyrgilauda ruficollis (rufous-necked snowfinch): 121348819
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Entry
121348819 CDS
T07608
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121348819 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121348819 (EDC4)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121348819 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
121348819 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_Prp19
WD40_CDC20-Fz
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
121348819
NCBI-ProteinID:
XP_041314680
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMNILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSVEGAQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPTHGSH
EEFAFPDHMADLSTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPPGLPGEVLEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMTQSPRSSNNQVTPEFQDEVMCILRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHMERVIDSQQEQEQRRLDRVLMEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVRDPLLNQLRQLISTFQSTTEQLASTIAASVHAE
VQHQLHVIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacccagcacctgcgggacatcctc
aagctggaccggccgggaggttcggtgaatgagaaccagagaccgtcgaattcgtataac
ggcgacctgaatgggctgctggtgcctgatccccttgggagcggagatggaccggctttg
gccaagccagtgcatcgcagcatctctctaggagccctgcaggagaagcaagtcatctgc
ctttctggtgatgacagctccacatgcttagtgatatcagcaaaagacgtggaggtagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtaaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtctca
aactcctacctggcttatgccattagagctgccagcaatggctctgctatggtgcgggtg
ttgagtgtcagcactgctgagcggaccttgctgaagggattcacgggaggcgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgtctggccatggataaagaaaaaatccaagaggagatcttggttaacatc
aagcgacctgacaataccccactgaacaccttccggagaatcatctggtgccccttcatc
cccgacgacaacgaggagagcggggaggagggaagtcagaccttggcattgttgcatgag
gacagggcagaggtgtgggatttggacatcatccgaaccaacaacagctcctggccggtg
gaagtgcctgatatcaaagaaggtttcattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggccaggatgagccaaggtgtcttcatgagtggaaa
ccccatgatggtagacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggtttctcatcacaggagctgatcagaacagagagctgaag
atgtggtgcacggtgtcttggacctgtttgcagactgttcgcttttctcctgacatcttc
agctccatgaatattcttcccagcctgaaagtctgcctggacctttccgctgaatatctg
atactgagtgatgtgcagagaaaagtcttgtatgtgatggagttgatgcagaaccaagag
gagggcaaggcttacttcagctccatctcagagttcctccttacccacccagtgctgagc
tttggcatccaggccgtgagccgctgccggctaaggcacaccgaggtgctcccagcagaa
gaggaaaatgacaacctgagtgtagaaggtgctcagggctctggggctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatt
agattccagcctcttcatagtcctgacacaagtgcttccatgcctacccatggctctcat
gaagaatttgcctttccagaccacatggctgatctgagcacggaagggctgggatctgag
aaggagtctgtgcacggctcccagccagacctgcggcgtatcgctgatctgcctgtgcca
gcagacttcctttctctctccagtgatgccaaacccaagctgatgactccagatgcattc
atgacaccaagtacttctcttcaacagattgctgtatctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacggatgcctctctgcccagagct
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacgctgagcagc
agcagcagcagtctccagaccagtcctaggagtcactctgttcttatcccaggcctccct
gacaagcttacaccaaaggcacctgttccagtcgcaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctcc
ccagatgtcatttcctctgcttccacagccatgtcccaggacatcccagagatcgcttcc
gagaccctgcagcgcagctttgcggcggctccgcccgggctccctggggaggtgctggag
cccgggcaccacgcagacagtatggcctcagctgcctctgccttgcacttgctgtctccc
aggaaccgccacaactccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatccttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccatggccagcagctcctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
cacgatgatgaagttgcaagcttggcttctacgtcaggtggatttggtgccaaagcatct
gcgcagaggctgcctgtgaaggactggaaagtcaaggcatccccccgggcttccccaaag
ctgaagaggaagggcaagaaagatgatggggatatgacccagtcaccaagatcatctaac
aaccaggtgacaccggagttccaggatgaggtgatgtgcatcctgaggagccagcagcgg
gagctctccgagctgcggcagaaccagatggagctgctgcagagactcacggatcacctc
gatgccatccagagctccctcatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggaccgggtgctgatggaagggcagcagcgcaatgggcagctc
caggagcacctgtcccagcagctctcccagtccctgtccacagctgtgtgtaaccgcctg
gagaggaccatccgcgaggagatgaagaagactgtgccccagtgcatttccaagagcatg
gatcctactgtcagccagctcagtaatactattgctaccaagctcactgctgttgagggg
acactgaaagagaatattaccaagctagtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctagaggctcacttgaagaacaag
aaggtacgagagcaggaggtgcgggacccgctgctgaaccagctgcggcagctgatcagc
accttccagagcaccacggagcagctggcctccaccatcgcggccagcgtccatgctgag
gtgcagcaccagctgcatgtcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaagtgagcctggctatgaaggagcagcaggcagctgtcacc
tcgagcatcgtccaggcaatgcgctcggcagccgggacacccatcccctctactcacatg
gatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctctatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccactgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagaactgaagttgaactac
ttggaggatgcagtgatgcaccttgaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcaaaagctcttccagttcctccaggtggaaccccacaac
cctctgagcaagcctgcgcgccgcctcatgatcatgctccagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
