Pyrgilauda ruficollis (rufous-necked snowfinch): 121349724
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Entry
121349724 CDS
T07608
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121349724 (SCAF4)
03041 Spliceosome [BR:
pruf03041
]
121349724 (SCAF4)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121349724 (SCAF4)
Spliceosome [BR:
pruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
121349724 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121349724
NCBI-ProteinID:
XP_041316370
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MKSHGLVLVLEKACGYHCLQGQFFFRPVSWNRNQIKKLFSLMEMKPPISRAKMILITKAA
IKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNIT
ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSATAPMAENATNNEG
SPPPPAKVPSEPPQVTANSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKP
QSPVIDNTVMAQVQAITAQLKTTAAQPPEQKAAFTAPEQKTSFDKKLLDRFDYDDEPEAV
EDSKKEDSAPSPSVSQPALTSLSFSAQAGWCSMPGGFPGEGMQQPVFPQLPNMDPFQQRM
MGMQQDPMRHQVPLPPNGQMPGFGLLPTPQFPPMAQPVMPPAAPVQPTFQSPFPVQAEPH
LQKPHQQDMEVEQPPIQEGKRHVSDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSR
SRDRRRRSPKSRSQERREREREKERRSKGLPQIKAETVSVCSTTLWVGQLDKRTTQQDVG
SLLEEFGPIESINMIPPRGCAYIVMVHRQDANRALQKLSRGNFKVNQKSIKIAWALNKGI
KPDYKQYWDVELGVTYIPWDKVKPEDLESFCEGGMLDNETLSPEWKGIPKKSENEVAQNG
GAEAAHNEPVSPIPKALPVPIPVPMPAPITVPPPQVPPHPSGPPVVGALQPPAFTAPLGI
PPPGFAPGVPPPPPPPFLRPGFNPLHLPPGFLPPGPPPPITPPVSVPHTPAVNIPNSTAT
GGNEDTTKESSVGNPIPTVVSGGRGNAESTDTSKIYGTVPPPVAPTNVPAPVTQAVPLLG
TQGVAPPPPAPVVGLQTPSTGLLGARPGLIPLQRPPGMPPPLPRFPMMPPRHMPPHMMHR
GPPPGPGGFGMPPPHGMKTPFPPPGHFVRPAGGPGGGGPEENRDGRQFRNDRQFTPNRDQ
ERFGRRSFGNRAENDRERYGGRDEREHERLGGRDRRDWGRRSPERDRHRDSEDRSRRSSG
HRDRERDSRDRESRRDKEESRGKEKPEVTDRAEGDKNHESHGSKTEGAELVSELAAGDAE
PAGAKAAPEPAPEATSSLEQADKDTGSAAEAPR
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtcatggtcttgtgttggtgttggaaaaggcatgtggctaccactgtctgcaa
ggacagtttttcttccgtcctgtctcctggaataggaatcaaattaagaaactcttctca
ctgatggagatgaaacctcctatttcccgagcaaagatgattctcatcacaaaagctgcc
attaaagctattaagctctacaagcatgttgtccagattgtggagaagtttatcaaaaag
tgcaagccggagtacaaagtgccgggcttgtacgtcatcgactccatcgtgcggcagtcc
cggcaccagttcggaaccgacaaggacgtctttgggccaagattctctaagaatattact
gccacattccagtacttgtacctgtgtccatctgaagacaagagtaaaatagttcgtgtc
ctgaacctctggcagaaaaatggagtatttaaaattgaaataattcagcctctcttggat
atggcagcaggaaccagtgccactgcacccatggcagagaatgctactaacaatgaaggc
tcgccgccccctccggccaaggttccctcggagccgccgcaagtgaccgcgaactcagtg
cccgccgtgccgcagctgcccagctccgatgcctttgcagctgtagcccagctgttccag
acgacacaaggacagcagctccagcaaatcctgcagaccttccaacagcctcagaagccc
cagtcaccggtcatagacaacactgtgatggctcaggttcaagctattactgctcagctg
aaaaccacagcagcacagcccccagagcagaaagctgctttcacagcacctgagcagaaa
acatcatttgacaaaaagctgctagatcggtttgactacgatgatgaaccagaagctgtg
gaagattcaaagaaagaagattcagctccttccccttcagtgtctcagccagctttgacc
tctctctcattcagtgcacaggctggatggtgctcaatgccgggtgggtttccaggagaa
ggcatgcaacagccagtattccctcagctcccaaacatggatccttttcagcagcggatg
atgggaatgcagcaggatccgatgcggcaccaggtgccgcttcctccgaacgggcagatg
ccaggctttggtctcctgcctaccccccagttcccacccatggctcagccagtgatgcct
ccagcagcaccagtgcagccaactttccagtctcccttcccagtccaggctgaaccacac
ctgcagaaaccccaccagcaggatatggaagtggaacagccacccattcaggagggaaaa
cggcatgtttctgacagtaggaaatcaaggtctagatctgcatcaaggtcccccaagagg
agacgctcgcggtcgggctcgcgctcgcgccgctcccggcaccgccgctcccgctcgcgc
tcccgcgaccggcgccggcgctcgcccaagtcccgctcccaggagcggcgcgagcgcgag
cgggagaaggagcgccgctccaaggggctgccccagatcaaggcagagactgtcagtgtt
tgcagtaccacactctgggtaggacagctggacaaaaggacaactcagcaggatgtggga
agtctcttggaggagtttggccccattgagtccatcaatatgattccgcccagaggatgt
gcctacattgtcatggtgcacagacaagatgccaacagagccctccagaagctgagccga
ggcaacttcaaagtcaaccagaaatccatcaagattgcctgggctctgaataaaggaata
aagccagactacaagcagtattgggatgtagaactgggtgtgacttacataccatgggac
aaagtcaaacctgaagatcttgaaagtttctgtgaaggaggaatgctggacaacgagacc
cttagtccagagtggaagggaattcccaagaagtctgaaaatgaagtggctcagaatgga
ggcgcagaagctgcacacaatgaaccagtgtcacctattcccaaagctttacctgtccca
attcctgttcccatgcctgcaccaataacagtacctcctccacaggttcccccccatcca
tcagggcctcccgtggttggtgcactccagcctcctgctttcacagcacctttaggaatc
ccccctcctggatttgcccccggggtgccgccaccgccgccgcctccgttcctccggccc
ggcttcaacccgctgcatttacctccaggattccttcctcccgggccaccgcctcccata
actcctccggtctctgtcccgcacactccggcagtgaacatcccaaactctacagcaact
ggtgggaatgaggacactacgaaggagtcgtctgtaggaaatcccatcccaacagtagtt
tctggaggcagagggaatgctgaaagtactgacacttccaaaatctatggcactgttcca
cctcctgtagcacctaccaatgtccctgctcccgtcacccaggctgttccactccttggc
acccagggcgtggccccgccgccgcccgcgcccgtggtggggctgcagactccgtccacg
gggctgctgggcgcccggcccgggctgatcccgctgcagcgcccgccgggaatgccgccg
ccgctgccgcgcttccccatgatgccgccgcgccacatgccgccgcacatgatgcaccga
gggcccccgccgggccccggcggcttcgggatgcctcccccgcacggaatgaaaaccccc
ttccctccgcccggccacttcgtgcggcccgcgggcggcccgggcggcggcgggcccgag
gagaacagggacgggcggcagttcaggaacgacaggcagttcacgcccaacagagaccag
gagcggttcgggaggagatccttcgggaaccgggcggagaacgaccgggagcgctacggc
ggccgcgacgagcgggagcacgagcggctgggcggccgcgacaggcgagactggggacgc
cgcagccccgagcgcgacaggcacagggactcggaggacaggagcaggcgctccagcggc
caccgagacagggagagggattccagggatcgggagtctcgcagagacaaggaagaaagc
cgcggcaaggagaagccggaggtgacagacagggcggagggcgacaaaaaccacgagtcc
cacggcagcaaaacggagggcgcggaacttgtttcagaactcgctgcgggagacgccgaa
cccgcgggcgccaaagccgcgccagagccggcgcccgaggctacctcatccctggaacag
gcggacaaggacacgggctcggcggcggaggcgccgcgctag
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