Pyrgilauda ruficollis (rufous-necked snowfinch): 121350261
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Entry
121350261 CDS
T07608
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121350261 (COL17A1)
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Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121350261
NCBI-ProteinID:
XP_041317378
LinkDB
All DBs
Position
Unknown
AA seq
1511 aa
AA seq
DB search
MDSVTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHG
SSYVTSSGSGRLNSTSSSSSYRQAQSPSSTLTKSPGSTFERKTYVNRHATYEGSSSANSS
PEFPRKDFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRS
SSGTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLGGYHNSS
SLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSSSSTVFGVQNNLSPSSSSATQNATAASA
AYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDVLRKDCKFLLLEKEKAPAKEMELLVMT
KDTGKVFSASNTGLSGGSFVEDTLKKEKQGFSSSYTTDTGLKSDANGGLKSMPKRDKETY
AEIRSGDAGGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLFLLGLLFGLIALAEEVRKLKS
RVEDLEKINGGLLAINQGNSKIEKDVSRVDFLHGNSPSLTFPYENEESVWLMVKSRLNKE
IERGYFRGERGERGEKGDMGIQGPKGDRGLPGVPGIPGPIGHAGPEGPKGQKGSMGEPGM
EGPMGQRGREGLPGPRGEPGPPGFGEKGDRGRNQPGPPGPPGPPGSTGLKGLMGSPGPQG
PPGPPGLQGFRGEAGLPGAKGEKGASGPPGPKGDQGEKGSRGMTGEQGSRGIPGPPGEPG
AKGPAGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGEPGLTGPQGPPGLPGNPGRPG
AKGEPGAPGKVISAEGSSTITLPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGPRGEKG
SPGEAVIETIRTEVSSLASQMLGDLQGRAGPPGPPGPPGESVQGPPGPRGPPGLPGPPGP
PGRPGSSMSTSEAFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGDPGLSAFSSHGERVTI
QGPPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPPGPSGGSSQEIQQ
YVTDYLKSDNVRHYFTGAQGPPGPPGPPGLITTADGMTLDYAELATRVMSYMTSSSGRYE
SFSSSVSTTSLLYQELLDLLQREEIRQYLIGPRGPPGPPGPGGDGMSLSLDYDELTRRFI
SYLSSSGMSIGLPGPPGPPGSPGISYSDLTAYLRNSEFSGVVGPPGPAGPPGPPGIPGSP
GTSLEDISAYLQNVGYSSLSGVRGPPGPPGPPGPPGFSGTGLLSYADITNSDEFRSELIQ
YLKSDEVRSYISGPPGPPGPQGPPGPKGDSGFVSGSMSSSYQGLRASEHLHGGSLGAEGS
HGGSLGTGSSYGSSMSSRSSYHASLGSDGAYDASMGTDGSFDGLLTEEESHRRSAGSSRS
YSNSFTGSLDYNELALRVSESLQSRGILQDLMSYTTQGPAGPPGPPGPPGISKIFAAYGN
VTADLMDFFRTHGAIQGPPGEKGERGYRGPKGDPGPMGPPGRQGHRGPKGEKGEKGEQLY
VGRRKRRAAGV
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtaacaaagaaaacgaggcaagatggatcagaagttactgaaagacttatt
acagagactgtaaccacaagactcacatccttgccacccaaaggagggagcagcagtggg
ctcaaaacatcatcccacactggaggaagtggagtggaaaagcggtcgtacacccatgga
agcagctatgtcacctcaagtggaagtggtagattgaattcaacatcgtcatcctccagc
tacagacaagcccagtctcccagctctactctcaccaaatcacctggctcaacatttgaa
agaaaaacctatgtcaaccgccatgcaacatatgaagggagctccagtgccaactcttct
cctgagtttcccagaaaagattttgcatctgcctctacgagagggagaagccaaagccga
gagagtgaaatacgagtccgactgcagagcgcatctccctctggcagatggacggagttg
gatgatgtgaaacgtttgctgaaaggaagtcgatctgccagctgcagccctactcggtca
tcatccggtacactcccgataccgaaaaaggctgtggtggagacaaagatggtcactgag
agctctcagtcagtgtcagggacatatgacacaaccatactgaatactgctctcccttca
tatatgtggtcctccactctgcccgctgggtcttcccttggtggataccataacagctct
tccttgatcaatgccatgtctcactctacaggatcagtttttggtgttccaaataacctg
gctcccagtaatcatactctgaatgcaggcctgagttcttcctctacagtatttggagtt
caaaacaacctgtctccaagctcttcctctgcaacccagaatgctacagcagcctccgca
gcgtatgggatgaagaacacttctcagagcaacaccatggcaagtactggtgtgtcagcc
tcagcaggaggaactgttttgagctcccagggagacgatgttctgcgcaaagactgcaag
ttcctgctgctggagaaggagaaggcacctgcaaaggagatggagctcttggtcatgaca
aaggacactggcaaagtttttagtgcttctaacactgggcttagtggaggatcttttgta
gaagacaccttgaagaaagagaagcagggattttcctcctcttatactacagatactggc
ctaaaatcagatgcaaatggagggctgaaatccatgccaaaacgggacaaagaaacttat
gcagaaatacgaagtggtgatgcaggaggtgcaattggatcagcaccatcctggtgtccc
tgtggttcctgctgtagctggtggaaatggctcctgggtttgcttctagcctggttgttt
ctccttggattgctttttggactcattgctctggctgaagaagtgagaaagctgaaatct
cgtgtggaagacctggaaaaaatcaatggtggcctcctggcaattaaccaagggaattca
aaaatagaaaaggatgtttcaagagtagactttcttcatggtaactcaccgtccttgacc
ttcccatatgaaaatgaagaatcagtctggttgatggtgaagagcagactgaataaggaa
atagaacgaggctacttccgaggggagagaggagaacgtggtgagaaaggtgacatggga
atacaaggtcccaaaggtgatcgaggacttcctggtgtcccaggcattcctggtccaatt
gggcatgcaggaccagaaggaccaaaaggacagaagggaagcatgggtgagcctggcatg
gaaggtcccatgggacaaagaggtagagaagggctaccagggcctcgaggggagccagga
ccacctggatttggagaaaaaggagacagaggtaggaaccaaccgggtcctccagggcca
cctggacccccaggttctactggcctaaaaggtctgatgggttctccaggcccacaaggt
cctccaggtcctcctggcctacaaggatttagaggtgaagcaggactcccaggtgctaaa
ggtgaaaaaggagccagtggaccccctggacccaaaggtgatcagggtgagaagggttct
cgtggaatgacaggtgaacaaggctcaagaggaatacctggacctccaggagagccaggg
gctaaaggacctgcaggacaagctggtcgtgatggacagccaggtgagaaaggtgaacca
ggtcttatgggaatgccaggtgccagaggccctccaggacccactggagatgctggagag
ccaggtcttacaggaccccaaggaccaccaggacttccaggcaacccaggccgaccaggg
gctaaaggagaacccggagctccaggaaaagtcataagtgcagagggttcatcaacaatt
actctgccaggcccaccagggcccccaggcccacctggccccactggtcctccaggtgtt
ccaggtcctgttggaccagctggtctccctggacagcaaggtccacggggtgagaaagga
tccccaggtgaagctgtgatagaaaccatcagaacagaagtctcatcattagcatctcaa
atgctgggagatttacaagggcgagcaggaccaccaggtccccctggaccaccaggtgaa
tctgtgcagggaccccctggacctcgtggtcccccaggattgccaggacctccaggccca
ccagggagaccaggatcatccatgtccacctcagaagcgttcttcacaggcccaccaggt
ccaccgggaccgccaggcccgaagggagaccaaggtgaacgaggtccacggggattcaca
ggagaaccgggtgatcctggcctttcagcattctcctcccacggtgaaagagtcaccata
cagggacccccaggcccacctggcccacctggaccaaaaggtgatgcaggtgtcccaggt
gcacctggcatcccaggagcatctcgaggtggatccagacaaattcagggacccccagga
cctcctgggccacctggtcctcctggcccaagtggaggttcatctcaagagattcagcag
tatgtgactgactacctgaagagtgacaacgtcagacattatttcactggtgcccaaggc
ccaccaggccctccaggcccacctggacttatcaccactgcagatgggatgaccttggat
tatgcagagctggctacccgtgtcatgagctatatgacaagctcttcaggtcgctatgag
tcattttctagctcagtatccactacatcccttttgtaccaagaacttctggacttgctg
caaagagaagaaattcgtcagtatctcattggacctcggggcccaccaggacctcctggg
ccagggggagatggaatgtctctgtcactggattatgatgagctgaccaggaggtttatc
agctacttgtcaagttctgggatgagcattggactgcctggaccacctgggcctccaggg
tcacccggcatatcttacagtgacctgacagcgtacctgcgaaactctgaattcagtggt
gttgttgggccccctggtcctgcaggccccccaggacctccagggatccctggatcacct
ggcacctctctggaggacatctctgcctaccttcagaatgttggatactcttccctttct
ggagtccggggcccacctggccctcctggccctccaggaccaccaggtttctctggaacc
ggcctcctgtcctatgctgacatcaccaacagcgacgagttcaggagtgagctgatccag
tacctgaagagtgatgaagttcgaagctacatctcaggacctcctggaccccctgggcca
cagggaccaccgggacccaaaggagacagtggctttgtgtctggatctatgtcttcatca
taccaagggttacgagcttctgagcacttgcatggaggatcccttggtgctgagggctcc
cacgggggctcactgggcacaggcagttcatatggcagctccatgagcagcagatcctct
taccatgcctcactgggcagcgatggtgcttacgatgcctccatgggcactgatgggtct
tttgacgggctgctgacagaggaggaatcacacaggagatcagcagggtcaagcagatcc
tacagcaactccttcactggttccctggactacaacgagctagcactccgtgtgtcagag
agcctgcagagtcgaggtattctccaggacctgatgtcttacacaacacagggacctgca
ggtcccccaggccctcctggtcctcctggcatcagcaagatctttgcagcctacggcaat
gtcaccgcagacctcatggacttctttagaacacatggtgccatccaggggccacccggt
gaaaagggggagaggggttatcgtggacccaaaggtgaccctgggccgatgggcccacca
ggacgacaagggcacaggggaccaaagggagagaagggagagaaaggtgaacaactttat
gttggcagaagaaaaagaagagctgctggtgtttaa
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