Pyrgilauda ruficollis (rufous-necked snowfinch): 121350273
Help
Entry
121350273 CDS
T07608
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pruf03009
]
121350273 (PDCD11)
Ribosome biogenesis [BR:
pruf03009
]
Eukaryotic type
90S particles
Other 90S particles
121350273 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
Spt6_S1
OB_RRP5
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
UTP6_C
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21
TPR_12
TPR_16
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
121350273
NCBI-ProteinID:
XP_041317407
LinkDB
All DBs
Position
Unknown
AA seq
1833 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTPKPKSERDNLFDVQHEEKSLKRKRGQKDQEKQKRFKAD
KTVKAAVKDNVMNIGPLTIEALSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDA
YSKLLTKQVAQGEVLEELNSLPDMFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVNKG
VSSTALAAGMLLSGSVSSVEDHGYLIDIGVIGTHAFLPHEKAKNYIKAVKKGSDLKIGQN
LNCLIVEVKNEGRVVCLSIDRSEVAASIATERQNWALSNLLPGLVVKARVQKVAPLGMKL
TFLSYFTGIVDFMHIDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRSPFLHAGGAPRQ
LPGPRMGAVLEEATVKAFYKQFGAIFELDDGTLAFARLKHLSKTRKSFKPGAFKEGSKHK
CRIIDYSLMDEMCIVSLKNQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRG
LVPSLHLSDVILKQPEKKYNVGDEVKCRVLECNPGGKKLILTLKKSLVQSKLPVLSNYED
AKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLK
CEPQQERLLLSFRLSSKPGPEDKWKCTPKEKQEMKYQIGEIVDVKILKKKDNGLEVSILE
DEDNLVAWIPMLHLSDFVATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISAVQ
EEQVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSTDEEKQRVLLNLKVSECSSGDSAAESFGLLNQYFKELKEIRNLLKRGEPG
ICELVPGKRMHLVVQDVREDGSALFSGSSVTGLSVTATRYHLGAKNIAPGEKRKALVLHV
DALTSEVYVSLREELLKQRPKRRLRENSQHSAVVQHITEHFAIVSLLETGQLAAVPIACH
FNDTFRFDSEKLRVGQTISATLKAVKENNHGVLLAVQGPAKKNVFVRVRNESETALEEML
PAVKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKAGQ
KVTARVIGGRDVNTHRCLPITHPHFTQSIPELSIRPSEKEGEFTAMLNLKEEKSLKKLGL
YDIGQTVTCFVKKYNVLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKIGQAISA
TVTGTDATETNLCLSLTGIQSLEQDTISVGMVTKVTPHVGLTIALPGGKSGKVSIFHLND
TYTEDPLGNFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEIRSIKDVKKGQ
LVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYAKYLPEGKLLTAKVLRVN
RKEKHIELSLLPEDTGMPSVLPESLGLPQYGVEEEKREADGEEKREEPKPKTKKRRGNHE
SGQEAKPKKRKICPTDENDSGIEVYYREEEEDQEEEAAKKKSTVRKPGEAPRLQVSMGFT
WDEDSAMDIPVLDQKEESSESEEEEDMQSKLKKRTKKEKELEKQKKEKELCKVEAALMDP
SRQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL
NVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTML
KRFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTE
HAKALFESTLSSYPKRTDVWSIYMDIMIKHGSQKEIRDIFERVIHLSLAPKKMKFFFKRY
LDYEKKFGTAESVLAVKRAALEYVESKSSLADT
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgaggaggcatccagaagaaacctgcagaggga
aaaacacccaagccaaagtcagagcgggacaatttgtttgatgttcaacatgaagaaaaa
tccctgaaaagaaaaaggggccagaaagatcaagaaaagcagaaaaggttcaaggcagac
aaaactgttaaagctgctgttaaagacaatgttatgaatattggaccactcacaattgag
gcgctcagtgaggggatgctgctccttggctgtataaaagaggtcagtgattacgagctc
gccatcagtttgcccaacggcctctccggatttgtgccggtcacgcagatcagcgatgcc
tacagcaaactgctgaccaagcaggtggcccaaggagaagtcctggaggagttgaattcg
ctcccagacatgttttctccaggaacactggtcaggtgcatcgtgaccagcattgagaaa
agtgacgatggacgtcgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggc
gtgagctctacagcactagcagcaggcatgctgctctctggctctgtgtcgagtgtggaa
gaccatggctacctcatagatattggtgtcattggaactcatgctttcctgcctcatgag
aaagccaaaaattacatcaaagcagtcaagaaagggtctgacttgaaaataggccagaac
ctgaactgcctcattgtggaagtgaagaacgagggcagggtggtctgtttgtccattgat
cgatcggaggtggctgcatccattgccacagagcgacagaactgggcactctccaattta
ttgccagggctggtggtgaaagctcgagtgcagaaggtggccccacttgggatgaaactg
acatttctgtcttacttcactggcattgtggatttcatgcacattgacccagagaaatcc
atgagctattctccagatcaagtggtgaaggcctgcgtgctgtctgtacaccccacgtcg
agggcggtgcggctcacgctgcgctcgcccttcctgcacgccgggggagccccgcgccag
ctccccggcccacgcatgggggcagtgctggaggaggccaccgtgaaagccttctacaaa
cagtttggggccatctttgagcttgacgatggcactcttgcatttgcacggttgaaacat
ctttcaaaaaccagaaaatcctttaaacctggggcatttaaggaaggttccaaacataaa
tgtcggatcattgactacagcctgatggatgagatgtgtattgtatctctgaagaaccag
attattgaagcacggtttctgcagtaccaggatatccacacgggtgatgtggtgcagggc
aaagtgctctctctaaaacccattgggatgcaggtgaaagtggctgatgggattagagga
cttgtaccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaac
gtaggagatgaagtcaagtgtcgggtgctagagtgcaatcctggaggaaagaagctgatc
cttactctaaagaaaagtctcgttcagtcaaagcttccagtcctctcaaattatgaagat
gcaaaaccaggcctgatcacacatggctttgtagtgtgtgcaagggagtttggctgcatt
gtgaagttctacaacgatgtcaaaggtctggtacccaagaatgagctgggctcagaaccc
atatcttgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaa
tgtgagcctcagcaggaaagactcttattgtccttcagattatcaagcaaacctggccct
gaggacaaatggaaatgtactccaaaggaaaaacaggaaatgaagtaccagataggagag
attgttgatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaa
gatgaagacaatctggtagcctggatccccatgctgcacctttctgactttgttgctacc
tccaagctcctgtggcactgtcttcaagagggagatgtcctgcccagagttatgtatcta
agtgacaagggagagcacattatcttgagtagaaagtctgcagtgatttctgctgtacag
gaggagcaagttgtaagaagcttctcagaaatccagcctgggatgctgttgactggttat
gtgaggaatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactg
gcacctaaagtgagcatgagtgacaagtttgtgacagacaccaaggaccacttcgtggtg
ggacagactgtgattgcaaaggtgatgagcactgatgaggagaagcagcgtgtgctcctc
aatctgaaggtgtctgagtgcagctcaggagattctgctgcagagagctttggcctcctg
aatcaatatttcaaggagctgaaagaaatcaggaacttgttgaaaagaggagagcctggc
atctgtgagttggtgcctgggaagaggatgcatctggttgtgcaggatgtgagggaggat
ggctcagcactgttcagtggcagctctgtcacaggcttgtctgtaactgccacccgctac
catttgggagccaaaaatattgctcctggtgagaaaaggaaggcattggttcttcatgtg
gatgccctcacatctgaggtgtatgtttctcttcgggaagaactgttaaagcaaagaccc
aagcgacggctccgagagaactcgcagcactctgcggtggtgcagcacatcacagagcac
tttgccatcgtgtctctgctggagacaggccagctggcagctgtccccatcgcctgccac
ttcaacgacaccttccgcttcgactcagaaaaactgagggtgggacaaacaatctctgcc
accttaaaagccgtgaaggagaacaaccacggagtcttgttagcagtacagggcccagcc
aagaagaatgtttttgtaagggtgcggaacgagtcagagacagcactggaggagatgctt
cctgctgtgaaacactcgctgtccccgggggatgttgttactggtaccgtcaaatccgtc
aaaccgacccacgtcactgtagctattgatgacaagctgacaggttcaatccatgcatcc
cggattctggatgaagtgcccataggctcttttccaacttctactctgaaagccggacag
aaagtgactgctcgagtcattggaggcagagatgtgaatactcacaggtgcctgccaatc
acccatccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaa
ggggaattcacagcaatgctgaaccttaaagaagaaaagtccctcaaaaaacttggactc
tatgatattggacagacagtcacctgttttgtaaagaagtataacgtgctcaaaaactgg
ctggaggtagaagttgccccggacattcgaggaagagttcctcacctgctgctgtctctg
aacaccaaggtcttaaaacatccagaaaagagctttaaaattggccaggcaatatcagct
acagtgactggaacagatgccaccgaaacaaacctctgcttgtcactcacaggaattcaa
tcactggagcaggacaccatctctgtaggcatggtaacaaaggtgactccacatgttggc
ttgaccattgcattgccaggtgggaagagtggcaaagtcagcatctttcacctgaatgat
acttacacagaggatcctctggggaacttcaaagttggcaaaattgtgaggtgttacatc
ctctccaatgagaatggtaaaatccagttatcactcaggcaatcccggctaaatccaaag
ataaacagcaaagtggaggatattgaaataagaagtattaaggatgttaaaaaaggccag
ctagtgagaggctatgtcaaatcaatcactccatcaggtgtattctttggattgtccact
tctctcctgggccgaatcctgttccagaatgtttccccatactttgtacagaaacattcc
ttatatgcaaagtacctgcctgaaggaaagctgctcactgccaaagtacttagggtaaat
agaaaagaaaagcatattgagctctctctcctgcctgaggacactgggatgccaagtgtc
ttgcctgaatccctaggcctaccacaatatggagtagaggaagagaaaagagaggcagat
ggtgaggaaaaaagagaagagcctaagccaaagacaaaaaagagaagaggaaatcatgaa
agtggtcaggaggcaaagccaaagaagaggaagatctgcccaacagatgaaaatgacagt
ggaattgaggtatattaccgtgaggaggaagaggaccaggaggaagaggcagctaaaaag
aaatctacggtgaggaagcctggtgaagctcccaggctgcaagtttccatgggcttcacc
tgggatgaagacagtgcaatggatatacctgtgctggatcagaaggaagagagctcagag
agcgaggaggaggaggatatgcagtccaagctgaagaaacgaacaaagaaggagaaggag
ctggagaagcagaagaaggagaaggagctttgcaaagtagaggcggctctaatggacccg
agccggcagccccagtcagcagatgactttgaccgcctggtgctgggcagtcccaacagc
tccatcctctggctgcagtacatggctttccacctccaggctacagagattgagaaggcc
agagctgtggcagagagagcacttaaaacaatcagtttcagggaagaacaggagaagctg
aatgtctgggttgctctgctgaacttggagaacatgtatggtactgaggagacactgatg
aaggtttttgagagagcagttcaatacaatgagcctctgaaagtcttccagcatctgtgt
gacatctatgccagttctgagaagtacaagcaagcagaagaattgtaccacacaatgctg
aagcgttttcgtcaggagaaatctgtgtggctgaaatacgcctctttcctcctgaagcaa
ggccaggctgaggctacacacaggcttctggagcgtgctctcaaggctctgcccaccaaa
gaacatgtggatgtcatttcaaggtttgcacagctggagttccattctggggacacagaa
catgccaaggccctctttgagagcaccctcagcagctatcccaagcggacagacgtttgg
tccatctacatggacatcatgatcaagcatggcagccagaaggaaatccgagacatcttt
gagagggtcatacacctgagcttggcaccaaagaagatgaaattcttcttcaaacgctac
ctggattatgagaagaaatttggtacagcagaaagtgtcctggctgttaaaagagcagca
cttgagtatgtggagagcaagagttcccttgctgacacctaa
DBGET
integrated database retrieval system
