Pyrgilauda ruficollis (rufous-necked snowfinch): 121351079
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Entry
121351079 CDS
T07608
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03013
Nucleocytoplasmic transport
pruf03015
mRNA surveillance pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121351079 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
121351079 (CASC3)
03015 mRNA surveillance pathway
121351079 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121351079 (CASC3)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121351079 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
121351079
NCBI-ProteinID:
XP_041318873
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MMCAGELGWGSLRTWLLPSPPLTPLTFLSLQESEDGIEGDAVLSDYESAEDSEAEEEDYS
EEESSKVELKQDSNDSCESAARGEKGNEKVDPKGAVTGERQSGDGQESTEPVEKKVGKKV
PKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFRED
EQAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQG
AKSPSAPPRSFNSRSSANAGRMPSARNYPRMGGYKETRPGYRASEATVLHRNGEQAKQEG
GYRGKHAEQSPSRDTSPELEVGHVHGSPGKEEGALENQATGADVVQPPPDRPVEKKSYSR
ARRTRVKAGEAGKLAEEVPASEGLAPVIPKATPAETSPPPAKSNWESAVESSVDGLEQEM
TQMNLTEQNWSPGQSQFIPPRELRGIPNHMHVGTGPPPQFNRMEEMAVPGGRVKRYSSQR
QRPPVPEPAPPMHISIVEGHYYDPLQFQGPIYAHGENPAPLPPQGMIVQPEMHLPHPGLH
PHQTPPAMANPGLYPPPVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPP
PPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKSKER
SNT
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgtgcgggagagttgggctggggcagcctcaggacctggctgctgccctcccct
cctctaacacccctcacttttctctctttgcaggaaagtgaggatggcattgaaggagat
gccgtgctctctgactacgaaagcgccgaggactcggaggcagaggaagaggattacagc
gaggaagaaagctccaaggtggagctgaagcaggacagcaacgattcctgcgagtcggca
gccagaggggagaagggcaatgagaaggtggatcccaagggagcggtgacgggcgagcgg
cagagcggggacgggcaggagagcacggagcctgtggagaagaaagttgggaagaaggtt
cccaagcacctggatgacgatgaggatcggaagaacccggcgtacatcccacgcaagggg
ctcttctttgagcatgacctccgagggcagacgcaggaggaagaggtcaggccaaagggc
cgtcagcggaagctgtggaaggacgaggggcgctgggaacacgacaagttccgtgaggat
gagcaggcccccaagaccaggcaggagctgattgctctgtacgggtacgacatccgctca
gcccacaaccccgacgacatcaaaccccggaggatgcgcaagccacggtttggcagtccc
cctcaacgagaccccaactggtccaacgagaggccccccaagcccccgaggcaccagggt
gccaagagcccctcggctcccccacggtccttcaacagccgcagctctgccaacgctggc
aggatgccctctgccaggaactaccccaggatggggggctacaaggagacccgtccaggc
taccgggcttcagaggcgactgtcctgcaccggaacggggaacaagccaagcaggagggt
ggctaccgtgggaagcacgcagagcagagcccatcaagggacacgtcccctgagctggag
gtgggacatgtccatggtagccctgggaaggaggagggagctctggaaaaccaagccaca
ggtgctgatgttgtgcagccaccaccggacagaccagtggagaagaaatcttattcccgg
gcaagaaggaccagagtcaaggctggggaggcagggaagctggcagaggaagtgcctgct
tctgaggggctggctcctgtgattccaaaagccacgccagctgagacctcccccccgcca
gccaagagcaactgggagtcagcagtggaatccagcgtggatggacttgagcaggagatg
actcagatgaacctgacagagcagaactggagcccggggcagtcccagttcatcccgccc
cgggagctgaggggtattcccaaccatatgcacgtgggaactgggccaccaccgcagttt
aaccggatggaggagatggctgtgccggggggccgtgtgaagcgctactcatcgcagcgg
cagagaccccccgtgccagagcctgcgccccccatgcacatcagcatcgtggaagggcac
tactacgacccactacaattccagggaccaatctacgcccatggtgagaacccagccccg
ctgccgccccaagggatgattgtgcagccggagatgcacctccctcatccaggtttacac
ccccaccagacgccccctgccatggcaaaccccggcctctaccccccaccagtgtccatg
cccccgggccagcccccgccgcagcagctgctcactcctacttacttctccgcccctgga
gtgatgaatttcgggaatcctggctacccctacccccctggagctctgccccctccgccc
cctcctcatctctattccaacacgcaggcgcagtcccaggtctatgggggggtcacctac
tacaacactgtccagcagcaggtgcagcccaagccctccccgccccgccggacgtcccag
cctgtgaccatcaagccaccccctccagaggacagcaaaggtgaaaaatcaaaggagagg
agcaacacgtag
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