Pyrgilauda ruficollis (rufous-necked snowfinch): 121351827
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Entry
121351827 CDS
T07608
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pruf04131
]
121351827 (VPS13A)
Membrane trafficking [BR:
pruf04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121351827 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
Motif
Other DBs
NCBI-GeneID:
121351827
NCBI-ProteinID:
XP_041320137
LinkDB
All DBs
Position
Unknown
AA seq
3205 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLEGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKVADRDKVKEEKQDTFVEKLVTQVIKNLQLKISNIHIRYEDDITNRDNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFHKLVRLDNLFAYWNVKSEMFYHGGWDESLVNLKQGVA
SHNVIPDGYDFVFRPISAKAKLLMNPRSDVDFSSPKIDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPVHNNAKIWWKYVIDGVLGVNVQPKLQMWSWEHISHHRK
QVKNYKELYKTKITSKKPSEEILKLLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWSWSGGKKDEQNQEVKGSSLEQLMTQEEKAKLYAAIGYSETAGDP
TLPKSYEAMKFSVNLLSMSISIRENQQTPKLIEFALTDLSTVFTQRPGAQAIRFETKITS
LEVTGVSQGKCTPRLLSSRTVYSDDSTSLLSIMFETNPLDEKADQRIRIESQPLEIVYDA
MTVNNLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYIIETQKVLDLKINLMASY
IIVPQKGFYDHTSNLLLLDLGSFKMASKSRSDLSEIKVGQTSIEDIMSRAYDSFDVQLSS
MQLLYSKHDENWREARKLKNSSQCILQPLDVKLEFSRAMVVTDARMPRFKLSGQLPLLSI
QISDQKVTSILELIESIPKPESAPATSSPPKMTEATLSPVLSAPHLSQGVYPVLDLHSFA
ESESEEEFYDALSSPVEDVPFFEVSSDSLKQTVSTRRKNLHKQESLKNMTDFQLKFEVAE
VLIKLCRLTGDTEMPVLQLDILGLGTELKMRTFDMTGSAFLREIGLLCPEYIDDNDKPVY
IITTLDNVEDDLLTLEYTKTDIKGPELKTVCQNVLQKIKVNFSSLDVHLHTEALLNAMNY
LNNLLPKQVTKVVEEPVHEKTEEKKDVLKKLTTKKSKCEDVIDLIVCADLSCLRIFIREK
NHRIAEIHIEGLDSQVIMKKAATDVTAKLKNISIVDSDEKALYKKALYITEKEVFNFRMV
SYVNATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSVLAFINNFQAAKEALTEATVR
TAEKAATGVKGLAERSSRLALDINIKAPVVIIPQSAMSANVLVADLGLITVKNRFFIAKT
KTRCSLPPVIDSMTVKLSELKLYRSYYEQDSLQTEVQLLQPVNLELAVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENAGESSGASTALSESKASASHSSEIHGTSQ
HSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDSLTLVLYSPNSKQVNSLDQRDDLLKLAE
FKLVLMSAALKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDVNY
KQGRDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQPLPVKDQASVQP
VSTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYNMTAAVREIQMKAC
PFLPEERKGNITTVLQPCDFFFEMKQSGTNPQTADLTIKSLTIEVSPIIINTVITITSAL
YQTTETTKEEISQIPPDLWNKKDIKNLKMWFLEETNENEDKNPNTELVPTGESLKVNIES
VFITLEAGVGHRTVPMLLAKSSFVGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFKPWTLEIKMKKAKKALFESDDEEEENYKVPEYKTVINVSSKDQLNITLSKL
GLQMLSNLGTAFAEAASQTSDIFKKERAPFVIINSLGVPITVSPSDSFSVLNVEFGSKIF
HLEDKESLNMDFVRSRNESDQFTAMTTLSSKRFYIQICPHNHSAVEKIPLTKVGRCIYKV
RHEESGVERSIVSQIDTVEGSKIITIRSPIQIRNHFSIPLNVFEEGRCLGTASPANEFNI
PFSSYRSILSLQPLANENGVGGEYDMCEGITFDEIMKNVDSLLQRKCQSVRSTNHSLIIN
IVPVKDTLTTSLGAEDEWDFPYVVHLWPSVLLRNLLPYQITYSVEGSGNKYDTLQEGCSA
QIHNAVLDQTKLDLQLLNYLDEDWKSEYHIRSNLPDISFTTFYCVTELDKTELDIAVHMT
YTTGQMIIEIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQL
RVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRS
KYTLEVAEEGKEKWIPIVLQQKQWERELSGMCIPFWPENDANKLLVRVENSHLPPKKINF
DQQENCLLLHLDNKLGGIAVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYGQSS
LSELEDCLQPNKAVLYTWADPTGSRKLKWRCGNRIEEIAAKEDKMEVLRVDSRKVVYLMS
FYEGLQRIVLFTEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYIGIT
SSDVVWETKPKKKSRWRPMSVKQIDKLEQEFRDYSEPSPSENKIIELESNVLVCLTPNGM
NMTIQQPNEIPIRRNYMPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKP
PKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYAVVEFFTQT
DVPGDQELELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSN
KEERKNELIPFQSLNLLLKSIGATLTDVQDIVFKLAFFELRYHFCTTQQLQSAVVRHYSK
QAIKQMYILILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALV
GGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSG
FVSGITGIVTKPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADS
SEDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMV
TKSGVLFVTKGAFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKII
NFRSPEDAKWILSKLEEVRENQPKL
NT seq
9618 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtccctggtcgtggatgtcctgaaccgtttccttggcgactacgtggtg
aacctggacagctcccagttgaagctgggcatctggggaggagctgtagcactgaaaaat
ctggaaataaaagaaaatgcactgagtcagttggatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcagcctgttgag
gcggtccttgaaggagtttatttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaagccaggcagctcttggaagcaagacaaagggagctgcagagaatagaagaa
gcaaagcagaaggtagctgaccgagataaagtaaaagaagagaagcaagacacttttgta
gaaaagctagttactcaggtcatcaaaaatcttcagctgaaaatttccaacatccatatt
cgctatgaagatgatatcacaaatcgtgataaccccttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcg
aagttgttccacaagcttgtgcgactggataacctttttgcttattggaatgtgaaatca
gagatgttctaccatggtggctgggatgaatcattggttaacttaaaacagggagttgcc
agccacaatgtgattccagacggttatgattttgtattccgcccaatttcagctaaagcc
aagctccttatgaatcctcgatctgatgtggacttttcgtcaccgaaaatagatctagat
gtaaacttacaggatataactgttgaattcaataagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatataggaagtacagacctgat
gttccagtgcacaacaacgccaagatatggtggaaatatgttattgatggtgtccttgga
gtaaatgttcaacctaaactccaaatgtggtcatgggaacatatttcacatcataggaag
caagtgaagaactataaagagttgtataaaacgaagataacatcaaaaaaacctagcgaa
gaaatcttaaaattgttggaggaatttgaaaaggccttggatatttttaacatcacttta
gcaaggcaacaagcagaagttgaggcaactaaggctggattgaaaatctacaggccagga
gtaaaacaagatgatgaaaattctggtggctggtttagctggatatggagctggtcaggt
ggaaaaaaggatgaacaaaaccaagaagtaaagggttcaagtcttgaacagctgatgaca
caggaagagaaggctaaactttatgcagcaattggatatagtgaaacagctggagatcca
acccttccaaaatcatatgaagccatgaagttctctgtgaacttattaagcatgtctata
tcaataagagaaaaccagcaaactcctaagctaatagaatttgcattaactgacttgagt
acagtatttacccaacgaccaggtgcacaagcaataaggtttgaaacaaaaattacctca
cttgaagttacaggcgtgtcccaaggaaagtgtacaccccgtctcctgtcttctcgaaca
gtctattcagatgacagtacctcacttttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggattagaatagaatcacaaccactggaaatagtatatgatgca
atgacagtaaataacttagtggatttcttcagacctccgaaagatgtacatttagagcaa
ttgacatcagcaactctgatgaaacttgaagaattccgtgaaaaaacatcaacaggtctg
ttgtatattattgaaacccagaaagttcttgacctcaaaataaacctcatggcttcatac
atcattgttccacaaaaaggattctatgatcatacatcaaatttactacttctggatctt
ggtagttttaaaatggcaagcaaaagtcgttctgatttatcagaaatcaaagtaggacaa
acctctattgaagatataatgtccagagcttatgacagttttgatgtccagctcagtagc
atgcagttactatacagcaagcatgatgagaactggcgagaagctcggaagctgaaaaac
tcatctcagtgcatcttgcagcccttggatgtaaaactggaatttagcagggctatggtt
gttacagatgcaagaatgcccaggttcaaactgtcagggcagttgcctttactttctatc
caaatatcagatcagaaggtgacaagtatcttggagctaattgagagcattcctaagcca
gaaagtgcacctgctaccagttctcctccaaaaatgaccgaggctacgctgtcccctgtg
ctttcagcaccacatctatctcaaggcgtgtatcctgttttggatcttcattcatttgct
gagtcagaatcagaagaagaattttatgatgcactaagcagtcctgtggaagatgtgcca
ttttttgaagtttcatccgattccctcaagcagactgtcagtacaaggcgaaaaaaccta
cacaaacaggaatctctgaaaaatatgacagatttccagctaaagtttgaagtagctgag
gtcttaattaaattatgccgtcttactggtgatactgagatgcctgtgctccagcttgat
attttgggcttaggcactgaacttaaaatgagaacatttgacatgaccgggagtgctttc
cttcgtgaaattggtcttctgtgcccagagtatattgatgataatgacaagccagtttac
ataattactacattggataatgtagaagatgatcttctcactctggagtatacaaagact
gatattaagggaccggaactgaaaactgtctgtcagaatgttctacaaaaaataaaggtg
aacttttcttctctagatgttcatttgcatactgaagctctgctgaatgctatgaactat
ctgaataatcttctgcctaaacaagtaacaaaagttgtagaagaaccagtccatgaaaaa
acagaggagaagaaggatgttcttaaaaaattaacaacaaaaaaatcgaagtgtgaagat
gttattgacctcattgtctgtgcggatttatcatgtttgcgtatttttatcagagagaaa
aaccatagaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaagaaa
gcagcaactgatgtgactgcaaaattgaagaacatcagtattgtggattctgatgagaaa
gcattgtataaaaaggctctttacatcacagaaaaagaagtcttcaactttagaatggta
tcctatgtgaatgctacagatggcattgcatatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatctgtt
ttggcttttataaataactttcaagctgccaaggaagctctcactgaggcaactgttcga
acagcagagaaagctgctacaggtgtaaaagggttagcagagcgtagttcccgtttggcg
ctggatatcaacatcaaggcacctgttgtgataattccacagtcagcaatgtctgcaaat
gtcctggtggctgatcttggtctaatcactgtgaagaaccgattctttattgctaaaaca
aaaacacggtgtagccttccacctgttattgactctatgacggtgaaattgagtgaactg
aagctatacagatcttactatgagcaagattctttgcaaactgaagtacagttgctgcag
ccagtcaatctggaattagctgttgaacgaaatttagctgctgcatggtataatgaagtt
cccgatattgaaatatctggccgactcaagcctatgaatctcattctcagtcaggaagat
atcaccacaatactgaggacactaaatgaaaatgcaggtgaaagctctggtgcatcaacg
gctttgtcagaatcgaaagcatcagccagtcattctagtgaaatccatggtacttctcag
cactctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctatgaaa
ataaaaacaacactaaaactggacttcagatttgactctctgactttagtgttgtatagc
ccaaattcaaaacaggttaacagtttggatcagagagatgaccttttgaagcttgcagag
tttaaattagttctcatgtcagccgctctgaaaatgttatcagatggttcaatgaatgct
tcagtcaaactggcaaactgtactttagacgataaaagacagtcaatccagaaggctaca
ccaagaatggtggaaatgaaacatggatttgaaaagaaagttatggtggatgtaaattac
aaacaggggagagatggcactgttcttgatgttattgttcaagagatatacctttgtgca
agcatggagtttctacttactgtagcagatatatttctaaaggctaatgcagaaagtgct
gctgcacagagaaatctcaaacaaccattacctgtaaaggaccaagcatctgtgcagcct
gtatctacgatggaaatgaacatagttgttaaaaacccagagattgtgtttgtggctgat
ttaacaagaagtgatgctcctgcattggtggttacaacacagtgtgaggtcttcattaaa
aatagtcctgaaaggtacaacatgacagctgctgttagagaaatacagatgaaagcatgc
ccatttcttccagaagaaaggaaagggaacattactacggtattgcagccttgtgacttc
ttctttgaaatgaaacagtcaggtactaatccacagacagctgatctaaccattaaatct
ctaacaatagaagtttcaccaataatcataaacacagtaattactattacatcagccctt
tatcaaactacagaaacaacgaaagaagagattagtcaaattcctcctgacttgtggaat
aagaaagatataaaaaatctgaaaatgtggtttcttgaagagactaatgaaaatgaagat
aaaaatccaaacactgaactggttcccacaggagagtcattgaaagttaatatagaatct
gtttttataacacttgaagctggggttgggcacagaacagtaccaatgcttttagccaag
tcgtcatttgttggcgaagtcaagaactggagtactctaatcaacctacactctcgtctt
gagctagaggtacattattttaatgagatgtttggtgtgtgggaacctttgcttgaacca
ctagaagttgagaagactgacttattcaagccatggactcttgaaatcaagatgaagaag
gctaaaaaagcgctgtttgaatcagatgatgaagaagaagagaactacaaagttccagaa
tataaaacagtaataaatgtttcctcaaaagaccagctcaacattacactgtccaagtta
ggactgcaaatgttgagtaacttgggcacggcatttgctgaagcagctagtcagacttca
gacatcttcaaaaaggagcgagcaccatttgtaataataaattctttaggagttcccatc
acagtctcacctagtgattcctttagtgtccttaatgttgaatttggatcaaaaatattt
catttagaagacaaagagagtttaaatatggattttgtcagaagtagaaatgagagtgac
cagttcacagcaatgacaacactgagtagcaagagattttacattcagatctgtccgcat
aatcattctgctgtggaaaagattccgttgactaaagtgggtcgatgtatttacaaagtg
agacatgaggaatcaggtgttgaaaggtccatcgtcagtcaaattgacactgttgaagga
agcaagataataactatacgttcccctattcagataaggaatcacttttcaatcccttta
aatgtttttgaagaaggaagatgtttagggactgcttcaccagcaaatgaattcaacata
cccttttcctcttacagatccatactgagtttgcaaccactagccaacgaaaatggagtg
ggtggagaatatgatatgtgtgaaggaattacttttgatgaaattatgaaaaatgttgac
agtttgttgcagaggaagtgccaatctgtgaggtcaactaaccactcacttatcatcaat
attgttcctgtaaaagatacattgacaacttcattaggtgcagaagatgaatgggatttt
ccatatgttgttcatttatggccttctgttcttctccgcaatcttcttccttaccaaata
acttactctgtagagggaagtgggaacaaatatgacactctacaagaaggatgttctgcc
cagattcataacgcagttttggaccaaacaaaactagatttgcagttgcttaactatctt
gatgaagactggaaaagcgagtaccatataagaagcaatctgcctgatatcagcttcaca
acattttactgtgtcacagagctggataagactgagctggatattgctgttcatatgacc
tacacaactgggcagatgataatagaaattcacagtccctactggatggtgaataaaacc
ggtcgaatgttacaatacaaagcggatggtattcaccgcaagcatcctccagattacaaa
aagcccctccttttttctttccagcctaaaaacttccttcaaaataacaaggtgcagctt
cgggtaactgacagtgaactgtctgatcagttttcactggacactgttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggaatatcaagttggtgtcaccataaacaacagc
agtttcaatattactagaattgtaaccttcactccattttttatgatttcaaatagaagt
aaatacactttggaagtagctgaagagggcaaggaaaagtggattcccattgttttgcaa
cagaaacaatgggaaagggaacttagtggcatgtgcattcccttttggcctgaaaacgat
gccaacaaactgcttgttagagttgaaaattctcatctccctccaaagaagataaatttt
gatcagcaagaaaactgtcttttactgcatttggacaataagcttggaggaattgcagtg
gatgttaatttgactgaacattctacggtgattaccttttctaattaccatgatggtgca
gctccatttctgttgataaaccataccaaagaagaaattattgagtacggacaaagctcc
ctcagtgaattggaagactgccttcagccaaataaggcagtgttgtatacctgggcagac
ccaacaggatctagaaaattaaaatggaggtgtggaaatagaatcgaggaaattgccgca
aaggaggacaaaatggaagtcctcagagtggattctagaaaagtggtctatttaatgtca
ttttatgaaggtttgcagcgtattgtcctgtttactgaagatgagaatgtatttaaattg
acatacgaaagtgtcaaagcagaactagcagaacaagaaattgttctgtctttgcaagat
gttggaatttcattggttaataattatacaaaacaagaggtgtcctacattggaattaca
agttctgatgtggtgtgggagacaaaacccaagaagaagtcaagatggagaccaatgagt
gttaagcaaattgataaattagaacaagaattcagagattacagtgagccaagtccttca
gaaaataagattattgagttggaatcaaatgttttggtatgtttaactcctaatggaatg
aacatgacaattcagcagccaaatgagattcctatcagaagaaattatatgccagcttta
aaagtggaatacagttcctctgcacatcagaagtctttcagaattcaaatttacaggata
caaatacaaaaccagattcctggagccatatttccctttgtgttctatcctattaaacct
ccaaagtccatcaccttggattcagcaccaaaaccgtttactgatgtcagtattgtcatg
agaactgcaggacactcacaaatatctcatattaagtattttaaggttctgattcaagag
atggatctcagattagatcttggcttcctgtatgcagttgttgaattttttacacagact
gatgtgccaggtgaccaagagctagaacttttcaaaaaggatgttgaatctcttcaagaa
gaactaatgagtgtgtcatcaatggatacgtcacaaattagcttgtatgaatacttccat
atctctccaattaagttacacttgagcttttcactcagtacgggtggagaagatagtaac
aaagaagaaagaaagaatgaattgataccatttcagtccttgaatctcctgctgaagagt
ataggggccacccttacagacgtacaagatattgtttttaaattggcattctttgagctc
aggtatcacttctgtactacacagcagctccaatcagcagttgtaaggcattattcaaaa
caggctattaaacagatgtatattcttattcttggccttgatgtgttgggtaatccattt
ggattcataagaggcttgtcagaaggcgtagaagcttttttctatgaaccataccaggga
gccatccagggtcctgaggaatttatagaaggaatggcactaggacttaaagcactggta
gggggagctgttggtggattagcaggagctgcctcaagaatcacaggtgctatggcaaaa
ggagtagctgcaataactatggatgaagattaccagcaaaaaaggagagaagccatgaat
aaacaacccactggtctgcgagagggtatcactcgtggtggaaaaggactagtttctggt
tttgtcagtggcataacaggaatagttacaaaaccaataagaggagctcaagaagaagga
gcagctggttttttcaaaggtgttggaaaaggcttagttggagcagtagcgaggcccact
ggtggaatcatagatatggcaagcagcacgtttcagggtattaaaaaggttgcagattca
tcagaagatgtgataagcctgagaccacctcgtttctttggtgaagatggagttattaga
ccttacagattaagagatggaactggaagtcaaatgttacagaaaattgaaaatggaaga
tttgcaaaactcagatatattgcacatgctatggtcaacagtacagatctgttaatggta
acaaaaagtggtgtgttatttgtgacaaaaggggcgtttggacagctgacatgtgaatgg
caatacacttatgatgaatttaccaaagaaccattcatcgttgatggtcgaagattgcgc
attgaagccaaggaacgagttaaatctgtcttccatgccaaagaatttggaaaaattatt
aattttagaagtccagaggatgctaagtggatcctttctaaactagaagaagtacgagag
aatcagccaaaattgtaa
DBGET
integrated database retrieval system
