Pyrgilauda ruficollis (rufous-necked snowfinch): 121352164
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Entry
121352164 CDS
T07608
Symbol
SMG5
Name
(RefSeq) protein SMG5 isoform X1
KO
K11125
protein SMG5
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121352164 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121352164 (SMG5)
03032 DNA replication proteins [BR:
pruf03032
]
121352164 (SMG5)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121352164 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
121352164 (SMG5)
DNA replication proteins [BR:
pruf03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121352164 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
121352164
NCBI-ProteinID:
XP_041320799
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MSQGGGAAGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQDVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQVGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQEPREPVNSIEKEAEAELANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQSSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPSEE
GSSQGKSGPKEALKNCVDSSGLGDSKGPGISKTEAVDPAVNGPASLSTNDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPNSEPPALKDGIESKPCVNGDLEKPSLAEQDDVSDSE
ESISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLS
VLLNLLPSAADLQESGLALCDEVKDILSDAELPDLKANLLLPEDVALRNLPALKNAHKRF
NFEQDRPIFSAIEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDSLLHQ
AQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQH
LALVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVG
KSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSSFSVP
MQSAIQAAANASIEIKNVLEFYKQWKEMG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggtggcggggccgccggcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgggcagtggttgaggccgtgcaccggctggatctcatccttggc
aataaggcagcttatcaggatgtgttcaagccagagaacatcagcttgaggaacaagctg
cgggagctgtgcgtgaagctgatgttcctgcatccagtggattatggaagaaaagcagaa
gaactgctctggagaaaggtttactatgaagttatccagctcattaaaacaaataaaaag
cacatccacagccgcagcaccctggagtgtgcgtacaggactcacctggtggctggcata
ggattctaccagcacctcctgctctacatccagtcccattaccagctggagttgcagtgc
tgcatcgactggacacacgtgacagaccctctgataggctgcaagaaacccgtgtctgcg
tcagagaaggagatggagtgggcacagatggcctgtcaccgatgtctggtttatctggga
gatctagctcgctatcagaatgagctggcaggtgtggacacggagctgctggccgagcga
ttttactatcaagccctttctgttgcaccacaagttggaatgcccttcaaccaactgggg
acattggcagggagcaagtactacaacgtggaagcgacctactgctacttacgctgcatc
cagtctgaagtgtccttcgaaggtgcctatgggaacctgaagcggctgtatgacaaagca
gccaagatgtatcatcagctgaagaaatgtgagacaaggaagttgtccccaagcaagaaa
cgaggaaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttttgcag
ccaaagagcagctctttggattctgagctgacgtctctctgccagtctgtgttggaggat
ttcaacctatgcttattctacctgccctctcctcctaacctgagctcaactagtgaagat
gaagaagagtatgagagtggttactccttccttcctgatctcctgatctttcgcatggtg
atcatctgccttatgagcgttcacagcctcaagagggcaggttccaagcagtacagtgca
gccattgccttcacgctggctctcttctctcacctgataaatcacgtcaatattcgcctc
caggctgagctagaagaaggggaaaatcctgtcccagcctttcagagtgatggcacagat
gaccaggagccacgggagcctgtgaactcaattgagaaggaagctgaagctgagttggcc
aatcatcagcccagcgaggaacagcggaagaacgactgcaagaaaagcaagaagtactcc
cgtctgtcctgtctgcgccgccgccgccacccccagaaggtggatgagagcgacctgagt
gagggctttgactctgactccagccagagctccatcaagggcagtgatggctcagagagt
ggttcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacagactccgac
atgaacagccaagaatctcggtctgacttggaggacatggaggatgaacccagtgaggaa
ggaagcagccaaggcaaaagtgggcccaaagaggccctaaaaaactgtgtggatagcagt
gggctgggggactccaagggcccaggcatctctaaaactgaagctgtggatccagcagtc
aatgggccagcttccctgagcactaatgatgcaagcatagccagtaatctccaggccatg
tccacccagctgttccagaccaaacgctgctttcgcttggctcccacgttcagcaacatc
ctcctgaaacccaacagtgaaccacctgccttgaaggatggcatagagagcaagccatgt
gtcaatggagatctggagaagcccagcttggcagagcaagatgatgtgtctgactccgaa
gaaagcatttcaagtaacaaatcctgcagaaatgagcggtcccttcaggagaagttggag
attgtgaccaatgaagggctgctgcttactgtcaaggtgttcctggactggctgaggaca
aacacagacctcatcattatgtgtgctcagagctctcagagcctgtggaacaggctgtct
gtgctcctgaaccttctgccttctgctgcagacctgcaggaatcagggctggccctgtgt
gatgaagtcaaagacatcctgagtgatgctgagctcccagacctgaaggccaacctgctg
ctccctgaagacgtggccctgcgcaatctccccgctctgaaaaatgcacacaagaggttt
aacttcgagcaggatcggcccattttctcagcaattgaggagtctgtcgtgaggatctgc
tgcattcggagctttggccacttcattacccacctgcaaggcagcatcctgcagttcaac
tcagagcttggcatcttcatcagcatagcacagtcagagcaagacagcttgttgcaccag
gcccaggctcagtttcacatggctgcagaggaagctcgtcggaacaggctcatgagagac
atggctcagcttcgactgcagctggaggtgtctcagctggagggcagtctccagcagccc
aaggcacagtcagccatgtctccttacctggttccggacacccaggccctctgccagcac
ctggctcttgtcaagcagctggccactagtgggaggttcataatcatcatccctcgaaca
gttatcgatggcctagacttcctgaaaaaggagaacgccggtgctagggacagcattcgg
tatctggaggcagaatttaaaaagggaaacaggtacattcgttgccagaaagatgttggg
aagagctttgagaggcataaattgaagagacaagatttagatgcctggaatctgtataaa
attctggacagctgcaaacagctgacagtgtcccagggcagtggagaggatgacaccacg
ggaatggtcaccatcatcacgggcttccagctggaggacccgagctccttctcagtgccc
atgcagtctgccatccaggcagccgccaatgccagcatagagataaagaatgttctggag
ttctacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
