Pyrgilauda ruficollis (rufous-necked snowfinch): 121352701
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Entry
121352701 CDS
T07608
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03013
Nucleocytoplasmic transport
pruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121352701 (UPF1)
03015 mRNA surveillance pathway
121352701 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121352701 (UPF1)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121352701 (UPF1)
5.6.2.5 RNA 5'-3' helicase
121352701 (UPF1)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121352701 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121352701 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121352701
NCBI-ProteinID:
XP_041321812
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcacagggccagggc
ccccccggagcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgcgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtggaaacacctctggcagccacattgtgaaccacctggtg
agagccaagtgcaaggaggtgaccctgcacaaggatgggcccctgggagagaccgtgctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgggcccgccagatcacagcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaacccttgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgactcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaagggaattgggcacgtgatc
aaagttcctgataattatggtgatgagatagccatcgagctgaggagcagcgtgggagct
cccgtggaggtcactcacaacttccaggtggattttgtctggaaatccacttcctttgac
aggatgcagagtgctctgaaaacatttgcagtggatgagacctcagtgtctgggtacatt
taccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccagctgccaaaa
cgcttcacagcccagggactccctgatctcaaccactctcaggtttatgctgtcaagacc
gtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaaacagtgaca
tcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctggtgtgtgcc
cccagcaacatcgctgtggatcagctgacagagaagatccaccagactggcctcaaggtg
gttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttcctggccctg
cacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcagcagctcaag
gatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctgaagcgcacg
gcggagcgggagctgctcatgaacgctgatgtgatctgctgcacgtgtgtgggagctgga
gaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggcc
accgagcccgagtgcatggtgcccgtggtcctgggggcaaagcagctgatcctggtgggt
gaccactgccagctggggcctgtggtgatgtgcaagaaggcagccaaggctgggctgtcg
cagtccctgtttgagaggctggtggtgctgggcatccggcccatccggctgcaggtgcag
taccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggcgtcaccgcagctgacagggtgaagaaaggctttgatttccagtggccccag
cctgacaaacccatgttcttctacgtgacccagggacaggaggagattgccagctcaggc
acctcttacctgaacaggacggaggctgccaacgtggagaagatcaccaccaagctgctc
aaggctggggccaagcctgaccagattggcatcatcaccccctacgaggggcagcgctcc
tacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctaccaggaagtg
gaaattgcgagcgtggacgccttccagggcagggagaaggatttcatcatcctgtcctgt
gtgagggccaacgagcaccagggcattggcttcctcaacgaccccaggaggctcaacgtg
gccctgacaagagccaggtacggggtgatcattgtgggcaaccccaaggccctgtccaag
cagcccctctggaatcacctcctcaattactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctgcgcgagagcctcatgcagttcagcaaaccccgcaagctggtcaac
accatcaaccctggtgcccgtttcatgaccactgccatgtatgatgcacgggaggccatc
atccctggctctgtctacgaccgcagcagccaagggcgtccatccaacatgtacttccaa
acccacgaccagattgggatgatcagtgctggccccagccacgtcactgccatgaacatt
cccatccccttcaacctcgtcatgcccccgatgccccccccggggtacttcggccaggcc
aacggccccgctgcaggccgtggggctcccaaagggaagacgggccgcggcgggcggcag
aaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagccaggccagc
caggacgtggtgtcccagcccttctcccagggccccctgacccagggctacatctccatg
agccagccctcccagatgagtcagcctgggctctcccaaccggaattatcccaggacagt
taccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggactcaacttac
cagggagaacgagcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
