Pyrgilauda ruficollis (rufous-necked snowfinch): 121352957
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Entry
121352957 CDS
T07608
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121352957 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pruf03032
]
121352957 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121352957 (TOPBP1)
DNA replication proteins [BR:
pruf03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121352957 (TOPBP1)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121352957 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
121352957
NCBI-ProteinID:
XP_041322348
LinkDB
All DBs
Position
Unknown
AA seq
1518 aa
AA seq
DB search
MRSSKEPFFVKFIRSPGSSQYFSKALESIKEFQSEEHLQILEEAAVLSIKENDKSLYICD
PFSGVGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEHPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETMYKIEAGSKLSNAPSTSTPTND
TSKPPNHAFSDVSHISNINLSGVNETACSSAMSSRLDPVSDELENLDISSFQAAEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGDNNDELKHFLDKTAHRPHI
VTAKWLLESFGKGCLCPVEHYIPLNYQQLENPILEQPGMKSVFQKKTSLLKKDAVNIIKH
QKTAEDDFLSQYVDNYSALDEVEKLTSFSDVTNSTAQGENQPSVCNGSLAESSALAEGGL
FFGKRFILLGFGEEDESCMAHIIKENAGEVLPLQSRTIADYAVVPLLGCTVKATVGDVVT
NTWLITCVEQQALLDLRSNPLFTPVLVMEGATPLEDCVLSFSQFTGAERDSLAYLAELLG
ARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKRAD
ESKFLVENAEAEDTESFITQLSKTPATVKSPDLEQPFHLLEAGKKPVTPLDINRFQSKAF
QAVISHHTGKTTSVAQGGPLQKEPSLNLDTPSKFLTEDKFFKPSFDVKDALDALETPRGP
EQRTRKLSTPLSEVIGRNLKLALASSTTRAAALTASPQLAAAQPEVEEEPKPLAGAVIYV
SKKLNKRQRELNAIAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIVSEH
WLLESARECKRLPESLFPHTYNPKMSLDISAAQDIRLSSSSSSKPLSTGKPAEENEIIPV
DEDDAEDDVTTDQIKETVTVGEEQIVASESKGVLTQALEMRENFQRQLQELMSATSLVKP
PGQRGSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADINTEPSQSEQIIWDD
PTAREERARLVSNLQWPDSPSQYLEQGQSNTNKNMDESALKGFVPDAEMAGIAAPEAGHG
DVIESLKNPICRDPETPVKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVIEDEKADEERE
KLRKFQLSSLNPQERFDYCHLIEKLGGIVLEKQYFDPSCTHIVVGHPLRNEKFLASMAAG
KWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLSGINVNQKKLALAAMRWRKKIHKGK
QETGVVEGAFSGWKVILNVDLTKEAGFRRLLQSGGAKVFSGHSASLFKEATHLFADFSKL
KPDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYLQNNSDLEIGAS
QKRKALGEMNRVKRSRIH
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggaaccgttttttgtgaagttcataaggtctcccgggagctcgcag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatctccagatc
ctcgaagaagcagcagtactcagtataaaagaaaatgataaatcactttacatttgtgat
cctttcagtggcgtgggtttcagtcatctcaaaaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagcggtgcgttccgagagccgagcatcccgtg
tacaacatgaccatggccgatgtcacagtgtcctgtaccagcctggagaaggatgtgagg
gaagaagttcataaatacgtgcaaatgatgggtggatgtgtatacagagatctcaacgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttgcttccctcttgggttaagacattgtgggataagtctcagcaa
ggcataatgaggtacactgatgttaacatggaagactacgcctgtcctgtgttccttggc
tgcacgatttgtgtcactggcttaagcagctctgacaggaaagaagtgcagcgcctcact
gctgagcacggtgggcagtacacggggcagctcaagatgaatgaatgcactcacctcata
gttcaagagccaaaaggtcagaaatatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttccgacagcatcaagaagggcttctgtcaggatgagacgatgtat
aaaatagaggctggatcaaaactgagtaatgcacccagtacctcaacacctacaaatgac
accagcaagccccctaatcatgccttttcggatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaactgcatgtagctcagctatgagcagcagactggatcctgtttct
gatgagctggaaaacctggacataagttcttttcaagcagctgaagatttgttagatggg
tgtcggatctatctctgtggcttcagtggcaggaagctggacaagatgagaaggcttatt
aattgcggtggtggcgttcgatttaatcaacttaatgaagatgttactcatgtcattgtg
ggggataataacgatgagctgaaacactttttggacaagacggctcacaggcctcatata
gtgacagcgaagtggttgctggagtcatttggtaaaggttgtctgtgtccagtggagcac
tatatccctctaaactaccagcagttagagaatccaattttagaacaacccggaatgaag
tcagtttttcaaaaaaaaaccagtctcttgaagaaagatgctgtaaacattataaagcac
cagaaaactgctgaagatgacttcctctctcaatatgtagataactactctgcactagat
gaagttgaaaaactaacatccttcagtgatgttaccaactcgactgcccaaggagagaat
caaccttctgtctgtaatgggtctttggcagagtcttctgcactggctgaaggaggctta
tttttcgggaagagatttattctcctgggttttggtgaagaggatgagtcctgcatggca
catattataaaggagaatgctggggaagttctgccactgcaaagcagaaccattgcagac
tatgctgtggtacctttattagggtgcaccgtgaaggcaactgttggtgacgttgtcaca
aatacatggctgataacatgcgtggaacagcaggcccttttagatctccgatccaatcca
cttttcacaccagtcctggtaatggaaggagctacccctctggaagattgtgttctttct
tttagccagttcacaggtgcagagagggactcccttgcttatctggcagaactgctggga
gccagagtccaagaattctttgtgcggaaagccagtgcgaaaaaaggaatgtttgccagc
acccatcttgtggtgagagaacccaacggctccaagtatgaagctgcgaagaagtggaat
ttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagagcagat
gaaagcaagttcttggttgaaaatgcagaggctgaagatacggagagtttcattactcag
cttagcaagacaccagcaactgttaaatctcctgatttggaacagccatttcaccttctt
gaagctggaaaaaaacctgtgaccccccttgatatcaacaggtttcagagtaaagctttc
caagctgtcatctctcatcatactgggaagacaacttctgttgcacaagggggaccactt
cagaaagaaccatctttaaatcttgacacaccatcaaagtttcttaccgaagacaagttc
ttcaagccttcttttgatgtaaaggatgctctggatgctctggaaactcctagaggtcct
gaacaaagaaccaggaaactgagcacgcctctctctgaagtcatcggcagaaacttgaaa
ttggcactggcaagcagcacaactcgtgcggcagctcttactgccagccctcagttggct
gctgcacagccagaagtggaagaagagcccaagcctctagctggcgctgttatatatgtt
agtaaaaaacttaataagaggcaaagggagctgaatgcaatagcagcttctcttggagca
gactacagatggtgctttgatgaaacagtaacacacttcatctataagggcggacagaat
gataacaataaggagtacaaatctgttaaagaacggggtatacatattgtttcagaacat
tggcttttagagagtgctcgagaatgtaaacggcttcctgaatctctctttcctcacact
tacaatcccaaaatgagcctggacatcagtgcagcgcaagacatcaggctctcctcctcc
tcctccagtaaacctctttcaactggaaaaccagcagaggaaaatgagattattccagtg
gatgaagatgatgccgaagatgatgtaactactgaccaaattaaggaaacagtcactgta
ggggaagagcaaattgtagcaagtgaatccaaaggagtgttaactcaagcactagaaatg
agggagaacttccaaaggcagctgcaggagctcatgtctgccacatcactagtgaaacca
ccagggcaaagaggatccctttcaaggagcagctttgatggctctccagccactcctgat
agcgcacggtctgtgcgaaatggccgcagtagggtcttggaagctctaaggcagtcccgc
caggcactggcagatataaatacagagccatcccagagcgagcagatcatttgggatgat
cctactgcaagggaagagagagcaaggcttgtcagcaaccttcagtggcctgatagtccc
tctcagtaccttgagcaaggtcagagtaacaccaataagaacatggatgagtctgccctc
aaaggatttgtacctgatgcagagatggctggtatagctgctcctgaggctgggcatgga
gatgtgattgaaagtctgaagaatcccatatgtagagatcccgaaacaccagttaaggat
aacttgatccctactccacaggcccccagcattgctttccccctggctaaccctcctgtg
gcaccagagcccaaagaaaaggttgttattgaagatgagaaggctgatgaagaaagagaa
aaactccgtaaatttcagctgtcttctcttaatcctcaagaaagatttgattactgccat
ctgattgagaaattaggtggaatagtacttgagaaacagtactttgatccgagctgcaca
cacattgttgtgggacatcctcttcggaatgagaaattcttggcttcgatggcagctgga
aagtgggtgcttcatcgttcctacctggaggcgtgcagaggagctggctgctttgttcag
gaagaagactatgaatggggaagtaactccatacttaatgttttgtctggaatcaatgtg
aaccagaagaaactagcactggcagccatgaggtggaggaaaaaaattcataaagggaag
caagaaacaggtgttgttgagggagctttcagtggctggaaagtgatcctgaatgttgat
ctaaccaaggaagcaggattcaggcgtcttcttcagtcaggaggagcaaaagtgttctct
ggccattctgcatctctctttaaagaagcaactcacctctttgctgacttcagtaagctg
aagccagatgactccagggtgaacgtggcagaggcggcagcccagggagtgaactgcctc
aagcctgagtacatcgctgactacctcatccaggatccacctcctcctatggagtcttac
tgcttgccagaagctgagtcttaccttcagaataactcagatcttgaaattggagcatcc
cagaaaaggaaagcactgggagaaatgaatagagtcaagcgatccagaatacactaa
DBGET
integrated database retrieval system
