Pyrgilauda ruficollis (rufous-necked snowfinch): 121354810
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Entry
121354810 CDS
T07608
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121354810 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pruf03000
]
121354810 (ARID1B)
03021 Transcription machinery [BR:
pruf03021
]
121354810 (ARID1B)
03036 Chromosome and associated proteins [BR:
pruf03036
]
121354810 (ARID1B)
Transcription factors [BR:
pruf03000
]
Eukaryotic type
Helix-turn-helix
ARID
121354810 (ARID1B)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121354810 (ARID1B)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121354810 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
121354810
NCBI-ProteinID:
XP_041325660
LinkDB
All DBs
Position
Unknown
AA seq
2366 aa
AA seq
DB search
MIMAAQVAAAPASANNSKGKAPSLPVGLGPERGPGGAGAPGPGPALGVGEGSPAGGNSVN
NLDHHLHHHHRSEPPNMANNAAPAAAAGNNNNNASGGGGGSSSEPALKEGGSSSELSSSS
SSSSSSSSSSSNPGSAMETGLLPNHKLKSVGGDHPAAPPHHHHAHHPHHHAHHHHAHHPH
HHHHALQQQLNQFPPPPPQQPPPQHHPVQNNNSSLGGGGGGSGSNNNGGGGGGAAQPSAD
MEQQQHGGKDSVLGAQAEPPQQPQQMLNKGADEEEMPGKMGEPIGGRYDHPGLGPLGGQQ
QPQQPPPSAGSGGGGLGGGGGSGGGGGGPSAVGVSEFNSYYGNPAPAPASSATASRAGPC
FDQHGGQQSPGMGIMHPTAAPNSMDPLQNSHEGYPNSQYNHYPGYGRGPXXAVAAAAAAA
AGAGGGGYGGSAAGYGVLSSPRQPGGGMMMGPGGGAGLGKAGAGAAAAAGGFARFSGQNQ
HPSGATPTLNQLLTSPSPMMRSYGSSYPDYSSPSAPPQPQPQAAAAAPGSQQAAAGMGMG
KDMGAQYGAANPAWAAAQQRNHPAMSPGNTGQAISRTQGSPMDPMVMKRPQLYGMGNNPH
SQAQQSSPYAGQSYGPPGPQRYPVGMQGRAPAAMGGMQYPQQQIPPQYGQQGVSGYCQQG
QQPYYNQQPQPQHLPPQAQYLSQAQQRYQAQQDMSQEGYGTRSQPPMAPGKPNHEDLNLI
QQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGEQSNPA
QSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESS
SHPALSQSPMPQDRGFMAGIQRNPQMSQYGPQQTGPSMSPHPSPGGQVHPGIGSFQQSNS
SGTYGPQMSQYGPQGNYSRPPTYSGVPNTSYSGPGPGMGINANSQMHGQGPSQPCGSMPL
GRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANS
AQSRQGNFPAMNQSGIMGSSSPYTQPMNNSSGLMNPQAPPYSMAPNMVNSSTGNAPMGLA
DMMTPGESKLPLPLKADGKEEGAPQPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSAS
ISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKMWVDRYLTFME
ERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTSSSAASSL
KKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPANSGSLQGPQTPQSTGSN
SMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVSDSAFPKRNSMTPNAPYQ
QGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNSGIQDMYNQSPSGAMSNM
SMSQRQQFSYGSGYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKRHMDGMYG
PPAKRHEGDMYNMQYGNQQQEMYNQYGNAYTGPDRRPMQGQYPYPYNRERMQGPGQMQQH
GIPPQMIGGPMQSSSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMM
VPDQRINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASF
QRSLENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRREITFPPGSVEASQPV
LKPRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGF
LELLVEYFRKCLIDIFGILMEYEVGDPGHKALDHKAAKKDDSQSLAEDTGKDENDECIDY
FDEDEEEGEDEKVEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNNLFVVDRS
DKLGRVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKKKDLEGKG
ESEEQQEKSITATIDDVLSARPGALPEDSNSGSQTESSKFPFGIHQAKSHRNIKLLEDEP
RSRDETPLCTITHWQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILGKLILLHH
EHPERKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTES
ICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATP
PFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFL
EDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLL
DISISAVLNSLVASVICDVLFQIGQL
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtcgcagcggctccggcgagtgcgaacaacagcaagggcaaa
gccccgagcctgccggtcggcctgggcccagagcgaggcccggggggggccggggctccc
gggccgggccccgcactgggggtcggcgaggggagtccggccggcggcaacagcgtgaat
aatttagatcaccatctccaccaccaccaccgcagcgagccgccgaacatggccaataac
gcggctcccgccgctgccgccggtaacaacaacaacaacgccagcggcggcggcggcggc
tcctcctcggagccggctctgaaggaaggtggaagctcctcggagttatcttcatcttct
tcgtcttcttcctcctcctcctcctcctcctccaacccgggctcggctatggagacgggg
ctgctccccaaccacaagctgaagagcgtcggaggcgatcaccccgccgcgccgccccac
caccaccatgcccaccacccgcatcaccatgcccaccaccaccatgcccaccacccgcac
caccaccaccatgcactacagcagcagctaaatcaattcccgccgccgccgccgcagcag
ccgccgcctcagcaccatcccgtgcagaataacaacagcagcctcggcggcggcggcggc
ggcagcggcagcaacaacaacggcggtggcggtggcggcgctgctcagcccagtgcagac
atggagcagcagcaacatggaggaaaagacagtgttttgggcgctcaggccgagcccccc
cagcagccgcagcaaatgctgaataaaggcgccgacgaggaggagatgcccggcaagatg
ggcgagcccatcggcggccgctacgaccaccccggcttgggacccctgggcggacagcag
cagccccagcagccgcccccgagcgctgggagcggcggcggcggcctcggcggcggcggc
gggagcgggggaggcggcggcggcccctccgcggtgggtgtctcggagttcaatagctat
tatggcaaccctgcccctgcccctgccagcagcgctacggcgagccgcgccgggccttgc
tttgatcaacatggcggacaacaaagccccgggatggggataatgcaccccacggcggcc
cccaacagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaac
cactacccgggctacggccgcggccccnnnngagccgtggcggcggcggcggcggcggcc
gctggggcaggcggcggcggctacgggggctccgcggcgggctacggggtgctgagctcc
ccgaggcagcccggcggcggcatgatgatgggccccggcggcggagccggcctcggcaag
gctggtgccggcgcggcggcggcggccggcggctttgcgcggttctccgggcagaatcag
cacccgtccggagccacccctaccttgaaccagctgctcacgtcccccagccccatgatg
cggagctacggcagcagctaccccgactacagcagccccagcgccccgccgcagccccag
ccccaggcagcggcggccgccccgggaagccagcaggcagcggcgggcatgggcatgggc
aaggacatgggcgcccagtacggagcggcgaacccggcctgggcagcggctcaacaaagg
aaccacccggcgatgagccccgggaacaccgggcaggccatcagcaggacccagggcagt
ccgatggatccgatggtgatgaagaggccgcagctgtacggcatgggcaataaccctcac
tctcaggcacagcagagcagcccctacgccgggcagtcctacggccctcccggcccccag
cgctatcccgtgggaatgcagggccgagccccggcagccatgggaggaatgcagtatcca
cagcaacagatcccacctcagtatggtcagcaaggtgtgagtggctactgccagcagggc
cagcagccgtactacaaccagcagccgcagccgcagcacctgccgccccaggcacagtac
ctgtcgcaggcccagcagaggtaccaggctcagcaggacatgtctcaggaaggctatgga
accagatctcaaccccctatggccccaggaaagcctaaccatgaagacttgaatctaatc
cagcaagaaagaccatcgagcttaccagttgaagtcttggcctccgaggatgctacattt
ggacacaaggatttatctggatccattgacgacttgccgactggaactgaagcaaccctc
agctcagctgttagtgcatcgggctctacgagcagccaaggggagcagagcaaccctgca
cagtctccgttttcccctcatgcttctccacatctctctggcatccctgggggtccgtcg
ccttcccctgtaggctcacccgttggaagcaaccagtcaagatctggtcccatttctcca
gcgagtattccaggcagtcagatgccaccgcagcctcctggcagccagtcagaatccagc
tcccaccctgccttgagccagtcaccaatgccacaggaccgaggttttatggcaggcata
cagaggaacccccaaatgtcacagtatggacctcaacaaactggaccttccatgtcacca
cacccctcacctggaggtcaagtgcatcctggaattggtagctttcagcagagtaattca
agtggtacttatgggcctcagatgagccagtatggaccacaaggaaactactccagacca
ccgacgtacagcggtgtccccaacacaagttacagtggcccaggacctggcatgggtata
aatgccaacagtcagatgcatggacaggggccaagccagccttgtggttccatgcccctg
gggcggatgccatcagctgggatgcagagcagaccatttcctggaaacatgagcagtatg
acccccaattctcctggcatgtctcaacagggaggccctgggatgggcccacccatgcca
actgtgaaccgtaaggcacaggaggcggctgctgcagtgatgcaggctgctgcgaactcc
gctcagagcaggcaaggcaattttcctgccatgaatcagagcgggattatgggatccagc
tccccctacactcagccgatgaacaacagctctggcctgatgaacccacaggctcctcct
tacagcatggcccccaacatggtgaacagctcaacaggtaatgcacctatgggtcttgca
gatatgatgacacctggtgagtccaaacttccccttcctctcaaagcagatggcaaagaa
gaaggagctccccagcccgagagcaagtcaaaggatagctacagctctcagggtatttct
cagcccccaaccccaggcaacctgccagtcccttccccaatgtccccaagctctgctagc
atctcctcatttcatggagatgaaagtgatagcattagcagcccaggctggccaaagact
ccatcaagccctaaatcaagttcctctaccacaactggagagaagatcactaaagtctat
gagctaggaaatgagccagagcgcaagatgtgggtggatcggtacctgacgttcatggag
gagaggggcacgcccgtggccagtctgccagctgtgggcaagaagcccttggacctgttc
agactctatgtctgcgtcaaagagattggaggtttagcacaggttaataaaaacaagaag
tggcgtgagctggcaaccaccttgaacgttggcacttcgagcagcgcagccagctccctg
aaaaaacaatacattcagtacctgtttgccttcgagtgcaagattgagcgaggggaggag
ccccctccagaagtcttcagcactggagataccaagaaacaacctaagattcagccgcca
tctcctgctaattctggttccttgcaaggcccacagactccacagtccactggtagtaat
tccatgacagaagtgccaggcgatttgaagcccccaacaccagcatccacacctcatgga
cagatgacacctatgcagggtggcaggaacagcgccgtcagtgtgcatgatcccttttct
gatgtgagtgattcagcgttcccaaagcgaaactccatgacgccaaatgcaccataccag
cagggaataaacatgccagatatgatgggaaggatgccatatgagccgaataaagatcct
ttcggtggaatgagaaaagtgcctggaagcaatgagcctttcatgacccctggacaaatg
cctaacagtggaatacaagatatgtataaccagagtccatctggagcaatgtccaacatg
agcatgagccagcgacagcagttctcttatggaagtggctatgacaggaggcatgaacca
tatgggcagcagtatccaggacaaggacctccctcaggacagccaccatatggaggacat
caacctggaatgtatccacagcagcagaactacaagagacacatggatggcatgtatggg
cctccagccaaacgccacgaaggggatatgtataacatgcagtatggcaaccagcagcag
gagatgtacaaccagtacggcaacgcttacacagggcctgacaggaggcccatgcaggga
cagtacccatatccatataacagggaaaggatgcagggcccaggacaaatgcagcagcat
ggaatacctccccagatgattggtggccccatgcagtcgtcatcctccagtgaaggtcct
cagcagaacatgtggccaacacgaaatgatatgccttacccttaccagaacaggcaaggt
ccaggaggccccgcacaggcccctccgtatccagggatgaatcgcactgatgatatgatg
gtacctgaccagaggataaaccacgagagtcagtggccttctcatgtcaaccaacggcag
ccttcttatatgtcatcctcagcctccatgcagcctatcactagacctcctcagtcatcc
taccagacaccaccctctatgccaaaccacatctccagagctccaagtccagcatctttc
cagcgctctttggaaaaccgtatgtctccaagcaagtctcctttcctaccctccatgaag
atgcaaaaggttatacccacagttccagtgtcacaggtcacaggacctccaccccaacca
ccaccgattaggcgagagattaccttccccccaggctctgtagaagcctcccaaccagtc
ttaaaaccaagacgaaagattacctcaaaagatattgtaactcctgaggcctggagagtg
atgatgtctcttaaatctggtcttttggctgaaagtacctgggcgctagacactattaat
attcttctgtatgatgacagcactgttgctactttcaacctctctcagttgtctggattt
cttgagcttttagtagaatattttagaaaatgcctgattgacatttttggaatccttatg
gaatatgaagtgggagatccaggccacaaagcacttgatcacaaagcagccaagaaagat
gatagtcagtccttggcagaggatactggaaaagatgagaatgacgaatgtattgactat
tttgatgaagatgaggaggagggggaggatgaaaaggtagaaggagaagaaaagagcatt
gttttttctactcctggtgccattgctgatccaagtgagaggccaaaacaagccagtaaa
tttgacaagctgccaataaagattgtaaagaaaaataatctgtttgttgttgaccgatct
gacaaacttggacgcgttcaggaatttgatagtggacttctccactggcagcttggtggt
ggtgacacaactgagcatatccagactcactttgaaagcaagatggagattccaccacgc
aggaaagcccctcctcccttgaactctccaagcaaaaagaaggacctcgaggggaaaggt
gaatctgaggagcaacaagaaaagagtataacagcaaccattgatgatgtcctctcagct
cggccaggagcactacctgaagactcaaactctggttcccaaacagagagcagtaaattt
cccttcgggatccatcaagccaaaagccaccggaatattaaactgctagaggatgagcca
aggagccgggatgagactcctctatgcaccataactcactggcaagactccttggccaaa
cgctgcatctgtgtgtcaaatatcgtccgtagcttgtcttttgtgcctggcaatgacacc
gaaatgtccaaacatccaggcttggtgctgatcctgggaaagttgatccttcttcaccac
gagcatccagaaagaaagcgagcgccgcagacttacgagaaagaggaagaggaggacaaa
ggggtggcctgcagcaaggatgagtggtggtgggactgcctcgaggtcttgagggataat
acattggtcacattagccaacatttctgggcagctagacttgtctgcttacacagaaagc
atctgtttgccaattttggatggattgctgcactggatggtgtgcccgtctgcagaggca
caggatccttttccaaccgtggggcccaactcagttctttcgcctcagagacttgtgctg
gagaccctgtgtaagctcagtatccaggacaataatgtggaccttatcttggccaccccc
ccattcagccgtcaggagaaactctacgctactttagttaggtacgttggggaccgcaaa
aacccggtctgccgagaaatgtccatggcgctcctatcgaaccttgcccagggggacaca
ttagcagcaagggcaatagctgtgcagaagggaagcattggaaacttgataagcttcctg
gaggatggggtcactatggcccagtaccagcagagccagcataacctcatgcacatgcag
cctccgcctctggagccgcctagcgtagacatgatgtgcagggcagccaaggccttgctg
gccatggcgagagtggacgagaaccgctccgagttccttttgcacgagggtcgtttgctg
gatatctcaatatctgctgtcctgaactctctggttgcatctgtcatctgtgatgtactt
tttcagattgggcagttatga
DBGET
integrated database retrieval system
