Pyrgilauda ruficollis (rufous-necked snowfinch): 121354943
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Entry
121354943 CDS
T07608
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121354943 (SCAF8)
03041 Spliceosome [BR:
pruf03041
]
121354943 (SCAF8)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121354943 (SCAF8)
Spliceosome [BR:
pruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121354943 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121354943
NCBI-ProteinID:
XP_041325967
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKKVEDSEGFVFTEI
HVIGSLVKDPLVVLDKKIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPA
NVAQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAG
LVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQL
PLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQ
GSSQQQFLEVEANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRS
RSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIR
SKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRA
LQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGG
MIDQETVNTEWETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAV
PAVSLVPPAFPVTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPP
VVPPVVPTPLVQPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKP
ESDDKGPHLTDLQISSSENNRSVQSDVSSTSGLVGGVQPPSVSSNSGLTGEGPPSAGSSS
SGLAGGVQPPSVSSSSGIVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSS
SGLMAGVPPPNASSSSGLLAGVHPPGVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSN
SGLLIMPPPNVSTSSGLMGVPPPNISSNSGLLAMQHPGAVPNMPHLNISNQRMPGMPLID
IRPGLMPHSPGPRFPLMQPGMPPQRTIPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFG
TPGRQNIDNISNPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPV
DPREGIGRPPVDGREHFARPHIDMRENFGRPGMDNLGRREHFGFNSDKHWGQRGDYDERE
HHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDR
DDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETE
SQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctgtatgtcattgactccattgtgagacagtctcggcatcagtttggacaagaa
aaggatgtatttgcaccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagaaagtggaggattctgagggttttgtcttcacagaaatt
catgttatagggtcattagttaaggatcctcttgtagttctggacaaaaaaattattcag
cctctcttggatatggcagcaggaattcctcctcccgttgtgacccctgtcttgcccagc
actacagctgctatgagcaacaatacgccaggtacgcctgtaactccagttaccccagcc
aatgtggcgcagagtttgcctgatccttgggtatctcagattgctaacacagacaccctt
gctgctgttgcacagattttacagagtcctcaaggccaacagcttcagcagttgatacag
acactgcagatacagcagcagaaacctcagccttcgctacttcaagctctggatgccggt
ctcgttgtccagttacaggcccttacagcacagctcacagctgcagctgctgctgctaac
acacttaatccactggaacagagtgtctcttttaataagaagctgatggacaggtttgac
tttggggaagaatctgaacaaaatgaagagcctaaaaaggaaactccctcttcccaattg
ccattagtaccagaatctgtgaacaactcactttttcaccaactagctgaacagctacag
cagcaaaatttagaacatctcagacagcagcttctggagcagcagcagcctcaaaaggca
agccctgaggagaatcaagaaggaaattttggttcagagcactctgcatcaccatcacaa
gggagtagtcaacaacaatttttagaagtggaagcaaatgtagatgattccatggatatt
caacagcaggacatggatatagatgaaggtcaggatattgctgaagaagagatttttgaa
caagaagaaaagaaatcagctgttcgttcaagatcaagaactcgttcaagatctcgttca
aggtcaccaagaaaacgaaggtctagatcacgatctggttctcgtaagcggaaacacaga
aaacgttcacgctcaagatcaagagaaaggaagagaaagtcttctcggtcatactccagt
gaaagaagggctagggaaagggaaaaagagcgtcagaaaaagggattgcctcctatacga
tcaaaaacactaagcgtttgcagtactactctttgggtaggtcaagtagacaagaaggct
acacagcaagatttaacaaacttgtttgaagaatttggacaaatagagtcaattaatatg
attcccccaagaggatgtgcttatgtctgtatggtacatagacaagatgcatatcgtgct
cttcagaaacttagttctgggtcatataaaattggatctaaaattattaagattgcttgg
gctttgaataaaggtgtgaaaacagaatacaaacaattctgggatgtggatctgggagtt
tcctatattccatgggagaaagtgaaattggatgatttagagggctttgctgaaggtggc
atgattgaccaggaaacagtaaatacagagtgggaaacagccagaagctcagaagctgct
aaagaaaatactcaaacgacgcagagtgctacagttgataagagtaccgttatcacaaca
cagacagaagcttacacacaaccagtcactatgctgcagattccagtagctccagctgtg
cctgctgttagcttggttccacctgcgtttcctgtcacaatgtctgtccctcctcctggt
tatagcccaattcctcctccacccttcttgagagcaagtttcaacccttcacagccacct
ccaggttatatgcctcctccagttccacctgttgtcccaccacccgttgtcccaccacct
gttgtcccaccagttgttccaacacctttagtacagcctccattaccaattgcacaagag
acgatgaaggatgttcctttcactggccttgttctaccagttggcacagttactagcaat
ctagctactccaacattatctgctggaagtgtttttaatcccctaccgatcaacaaacca
gaatcagatgacaaaggaccacatcttacagaccttcagatttcttccagtgaaaacaat
agatctgtgcaaagtgatgtctcgagtacctctggacttgttggaggagtgcagccaccc
agtgtctcaagcaattctgggcttaccggagaagggccaccatccgctggctcaagtagc
tctgggcttgcagggggagtacagccacccagtgtttcaagcagctctggaattgtagga
ggagtgcaaccgccaactgtttccagcaattctggtcttgcaggaggaatgcagttgcct
gctgtctccagtagctcttctcttgctggcgggattcagccaactaatgcctcaagtagc
tctggacttatggctggagtgccaccaccaaatgcctcaagtagctcagggcttctagct
ggagttcatcctcctggtgtctcaagcagccctggccttctgacaggaatgcagccaccc
agtgtttccagtagctcaggagttctggcaggagtacagccaccgagtgtttcaagcaac
tctgggcttctcataatgccaccacccaacgtttcaactagttctggacttatgggagtg
ccaccaccaaatatttcaagtaattctggacttctggcaatgcagcatccaggtgcagtt
ccaaacatgcctcatttaaatatcagtaatcaaagaatgccaggaatgcctcttatagat
atccgtccaggcctaatgccccattcgcctggaccaaggtttccattgatgcagccagga
atgccaccacagcgtactattcctcctcccgcaatccttgatccatctcttcacccacca
ccacctcgaggtccttttcctccaggagatatttttaatcaaacagaaagaccttttgga
acaccaggaagacaaaatattgataacatttctaatccagagaaaaggctaccacttgga
ggtgataacattcaacaggagggggacagagattatcgctttcctccggtggaaaaccga
gataatcttaacagaccatctccagtggatgtcagagattctgttggacgaccaccagtt
gatccaagagagggtataggaaggcctccagtagatggaagagaacattttgctagacca
catatagacatgagagaaaattttggaagaccaggtatggataaccttggccgaagagag
cattttggtttcaattcagacaagcactggggacagagaggagattatgatgaaagagag
caccatgccttccctatttatggtggccctaaaggcttccatgaagacagagagaggttt
cggcatgtaaactataggtttgatagtagaagtggtcccagttggaatagaggatttgaa
caagatgctcacagagattttgatgaccgcagaagaccctgggaaagacagagggatagg
gatgacagagattttaatttttgcagagaaattaatggaaacaggtttggaagagacaga
atgtcaaacaactggatcccgcctccacatccacgggtttttgaatattttgatggggcc
acttctcaacgcaaagctgataatatgccccaggtaaatggtgaaaatacagagacagaa
agtcagccaccaactgcacaggtgcaggatgatccagaactttatgaaaaactgacatct
tctgtcgagataaacaaagagaagagtgacacagaagctgatatagagagtgaaccagtg
gtagaaagcacagaaactgaggggacataa
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