Pyrgilauda ruficollis (rufous-necked snowfinch): 121355305
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Entry
121355305 CDS
T07608
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03015
mRNA surveillance pathway
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121355305 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
121355305 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121355305 (PABPC1)
03041 Spliceosome [BR:
pruf03041
]
121355305 (PABPC1)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121355305 (PABPC1)
mRNA cycle factors
Stress granule specific factors
121355305 (PABPC1)
Spliceosome [BR:
pruf03041
]
Complex C
Other components
Complex C specific factors
121355305 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
121355305
NCBI-ProteinID:
XP_041326529
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggccatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttggacaccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctgcgcaaaagcggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagctttgtatgacacattttct
gcttttgggaacatcctgtcttgtaaggtggtgtgtgatgaaaatggatccaagggttat
ggatttgtgcattttgagacacaggaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgcaaggagcgtgag
gcagagcttggagccagagcaaaagaattcaccaatgtttacatcaaaaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgctctaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgaaatgaatgggaaagagctcaatggaaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttatgtgaaaaat
cttgatgatgggatcgatgatgagcgtctccgaaaagagttctccccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaaggatttggatttgtatgcttt
tcatcaccagaagaagccaccaaagcagtcacagaaatgaatggtagaattgtggctact
aaaccattgtatgtagctctagcccagcgtaaagaggagcgccaagctcatctcactaac
cagtacatgcagaggatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggatacttcatggcagctattcctcagactcagaaccgtgct
gcgtactatcctactaatcagctcgctcaacttgctcgacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgcaatccgcccggcagcaccc
agaccaccgttcagtaccatgagaccagcttcgtcccaagttccgcgagtcatgtcaacg
cagcgtgttgctaatacatcaacacaaacgatgggtccacgtcctgcagcagcagctact
gcagccactcctgccgtgcgcacagtaccacagtacaaatacgctgcgggtgttcgcaat
cctcagcagcacctcaacacgcagccgcaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaag
cagatgttaggtgaacgtctattcccccttattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaattctgaactcctccacatgctcgagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataatcccactggggttccaagtgtttaa
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