Pyrgilauda ruficollis (rufous-necked snowfinch): 121355314
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Entry
121355314 CDS
T07608
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121355314 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121355314 (MTREX)
03041 Spliceosome [BR:
pruf03041
]
121355314 (MTREX)
03009 Ribosome biogenesis [BR:
pruf03009
]
121355314 (MTREX)
03016 Transfer RNA biogenesis [BR:
pruf03016
]
121355314 (MTREX)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121355314 (MTREX)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121355314 (MTREX)
Spliceosome [BR:
pruf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121355314 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
121355314 (MTREX)
Ribosome biogenesis [BR:
pruf03009
]
Eukaryotic type
Pre-60S particles
Helicases
121355314 (MTREX)
Transfer RNA biogenesis [BR:
pruf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121355314 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
121355314
NCBI-ProteinID:
XP_041326551
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGPAEGARRPGKRLEEKPSVPAAIVKPKREAE
IDHTENVILGKKPKLEDALSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLESIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccccgccgagggtgccaggaggccgggaaaa
cgattggaagaaaaaccctcagtaccagcagcaatagtcaagccaaaaagggaagctgag
attgatcatactgaaaatgtcattttgggaaaaaaaccaaaattggaagatgcattatca
gaagatgttaatctgacagatctgatgcctcaagtaaaagtgcagtctgtggaaactgtt
gaaggctgtacacatgaggttgcgcttccagcaaatgaggaattcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgctggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggcttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgca
tgggttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtgttcctttcggcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgtcctactccactgcagcattatatatttccagcaggaggagatgga
ctccatttggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtacttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgataatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagctagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgtggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccata
gaaattcttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatg
ggaattaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtcgatgaaaaaatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaggaaattaaccctgaatacatgttagaaaaa
tcattttatcagttccagcattacagaactattccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattgtatgtagttgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgctactgagtctgcaaagccagccagacctgatgagagaggagaaatgcag
gttgttcccgttttggtgcatcttgtctcagctatcagcagtgtgcgactctacatacca
aaagacctgagacctattgataacaggcaaagtgtgttaaaatctgtacaggaggtacag
aaacgttttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagac
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaatgatccaaatttggaatccatatacaaactctgtgaaaaaaaagcacag
attgctatggatattaaagtggcaaagcgagaattgaagaaagccagaactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgttttgagaaggctggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
cttacggaaatgatgttcaatggtctcttcaatgatttgtctgcagagcaggcaactgca
ctactcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaattgactgaacag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaagcaaagctggaaactgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtttttgaaggtagcataattcgttgcatgaggcgtctagaagaactgcttcggcagatg
tgccaggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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