Pyrgilauda ruficollis (rufous-necked snowfinch): 121355625
Help
Entry
121355625 CDS
T07608
Symbol
LMO7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121355625 (LMO7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pruf04121
]
121355625 (LMO7)
Ubiquitin system [BR:
pruf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121355625 (LMO7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
PDZ
LIM
PDZ_6
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
121355625
NCBI-ProteinID:
XP_041327145
LinkDB
All DBs
Position
Unknown
AA seq
1630 aa
AA seq
DB search
MHDSHKDDRSYRRIPVIEPKPTTDFNRFLPNKNKQTAYVPAPLRKKRIEKNEDNRRSWAS
PVFTESDGAFSSGRETNPVASCQNSRAECGLTNPASLQIIYEYDSGSDSEDERRLPDVVL
DDLANRRFLVKKSPVSSAAPGRHFMLRNDSPKSCSRESYPAGPLAAMLEPLSNQRRQRQL
DTKEENKPRANNPSQLSGYFDEDEEEVGIPNIEKDDLYFRKLSSSAPNTVVAFDKFLPKF
WTPEEELLWKKIKKSSFKPWYKEIQGFSRKRSDSEDEEFAYKQSCTIVANQSRPSFDWNS
SCRRDQNYKPTAEYVGSSLSQIAEGKILESSDQPSQFSLLQALQKYTDYVSSEMETRIDP
TSGPRLIKCRKNVSFIPGGKQGDEDNGYLYPDLENDDLFVRKTGAFHVNQVVLQDPRYLK
KFSEQEPPLEGEIILQPREGQTVIPDLEKDDMIFRKVLSQKKEVPLSGAPDKYHPALFPD
PWSLPEEIRSKFLCLLEKNAIPEERKSNGRVLSPSLHHKKDDMLTRKIESWKVGSNVQPV
NFIPGPCSEEDWKKWEAIREASKVRHKKRQMVERLFQKLSDEQGSKSLNDVSAEELQTLR
KIRYEELQKIKEQLQEQDLKWQEDLAKWKSRRKSYTSELQKKKEEREEIERRASEVSGRS
IKSLKEMQQERLYSHREERDQDSYEQQKQEHNWAYSLNDDVFSEEKAPSTAAKDWSAAKD
YRLEEDTSYSTKDSKSVSATQPPKENLPESSAAREAPAPPESLEREQSPALLSTGYSVNA
QTGSAQVSASLPRTYQKTDTSRLTSVVTPRPFGVHSRGISSLPRSFTMDDAQKYNGEVEK
AKRTQTLFTSISFSQPDSAHPVSTGAFRSRGEEEEEEKGVQSTPPLSLALPLKSQDQNAG
SSIPKPEYGIPPDSLSLASSAETASLTEPKDSKSMEQYSELRISINQRPGHSRSFGFTTN
WSSSGAVVQTVEEGSPAALCQLHVDDEIIAVNGTKVSHMDYSQWEEAISRALETGNLVMD
VRRYGKNDWGKDLPSLPRVRHKILNLTSMATNIIGTSENKWIDATSGEKVSNASTISTKR
DFSSSLQSSDTETKLINGMQGDLGSNEQRASEPISLKNLKRRSQFFEQGGPEPAMPDLPV
PSISAPSRRVWDQEEERKRQEKWQKEQDRLLQEKYQREQEKLREEWLRAKQEAEKESSKY
FDEEQTVLTLNTTSVTSQAPPVSSWRASPEANALEEPERDGENELAASSLHEEEGRRRLQ
EEQSIQEEAARHFEQEQELQELELERQRKEREQQHAEEQRRQAEMEEQRQQAEKQREVSV
EVPQYQRHYERYEVSKTIEERAGHPVIDRHYERYEVSKTIEEQPGQSFAHRNKSKSTTEL
NEFNTIRNGTQSKYSERSWNMGESQKKSQKEQNLSAAELERQQILQEMRKKTSLHTDSSW
IRQRSASIHKEPVSLYSSSMRRGESLDNLDSSGIRSWRHHSWLNQSASSSSLSSSQDFSR
PVSTSNRAYMCTPSSSKAPPVATSARAPSTTQTAPRAQSPLSASQSGSQTRSRSVSGKKI
CSYCNNILGKGAAMIIESLGLCYHLHCFKCVACGRDLGGSRSGAEVRIRNNKLFCNDCYI
RFKTGQPTSM
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgcatgactcccataaagatgacaggtcttaccgcaggattcctgtgattgaaccaaaa
cctaccactgacttcaatcgtttcttacccaacaaaaacaagcagacagcatatgtgcca
gcacctttaaggaagaagaggatagagaagaatgaggacaacaggaggagctgggcaagt
cctgtcttcactgaatcagatggagcattttcaagtggacgtgaaacgaatcctgtagct
tcctgtcaaaatagcagagcagagtgtgggctcacaaatccagcttccctccagatcatc
tatgagtatgacagtggctctgattcagaagatgaaagaaggctgcccgacgttgttttg
gatgacttagcaaatcgtagatttctagtcaaaaagagccctgtaagctctgctgcacct
ggacgtcatttcatgttgcgcaatgactctcctaaatcttgctcgcgagaaagttatcca
gctggtccactagctgcaatgcttgaaccactgagtaaccagaggaggcagaggcagttg
gatactaaagaggaaaacaaaccaagagctaacaatccttcacaattatctgggtatttt
gatgaggacgaggaagaagtaggcatcccaaacattgaaaaagatgatctctattttcgc
aagctaagttcttcagcgccaaatacagttgttgcttttgacaaatttcttcctaagttt
tggactccagaggaggaattgctatggaaaaaaatcaagaaatcctctttcaaaccctgg
tataaagagattcaagggttcagtagaaagagatcagattctgaggatgaggaatttgct
tacaaacaaagctgtaccattgttgctaatcaatcaagaccaagttttgactggaacagt
agctgcagaagggatcagaattataagccaactgctgaatatgtgggaagctcattgtca
cagattgcagaaggaaaaatcttggagtcttctgatcagcccagtcagttttcgttactt
caggccctgcaaaaatacactgactacgtgtcttctgaaatggagaccagaattgatccc
acttctggccctaggctcataaaatgtagaaagaatgtttcctttataccaggaggcaag
caaggagatgaggacaatggatatctatatccagatttggagaatgatgatttgtttgtt
cggaaaactggggctttccatgtgaatcaagttgttcttcaagacccccggtatttaaag
aaattctctgagcaggagcctcctctagagggtgagataattctgcaacccagagagggc
caaaccgtgattccagatttggaaaaggatgacatgatttttcgtaaagtcctctctcaa
aaaaaagaggtgcctttatcaggtgctcctgacaagtatcacccagcactgtttcctgat
ccgtggagtcttccagaagagatccggtccaaatttctatgtttacttgaaaaaaatgcg
ataccagaggaaaggaagagcaatggcagagtgctgtcaccatctttacaccataagaag
gacgatatgctgacccgcaagattgaatcttggaaagtgggaagcaacgtccagccagta
aattttatcccaggtccatgcagtgaagaagactggaagaagtgggaagcaatcagggag
gccagcaaagttagacacaagaaacggcagatggtggagagactgtttcaaaagctttct
gatgagcaagggagtaaatctttgaatgatgtcagcgcagaggagctgcagacgctgcgc
aaaatccgttatgaagagctgcagaagataaaagaacagttgcaagagcaagatctaaag
tggcaggaagatctagcaaaatggaagagtcgtagaaagagttacacttcagaattgcaa
aagaaaaaggaagagagagaagaaattgaaaggagagcctctgaggtgtctggaaggagt
atcaagtcactgaaggaaatgcagcaggagaggctctattcccatagggaagagagagat
caggactcctatgagcagcagaaacaggaacacaactgggcatattcactgaacgatgat
gtgttcagtgaagaaaaagcaccttccacagcagcaaaagattggtcagcagccaaagat
taccgtttggaagaagacacttcctacagcactaaggacagtaaaagtgtgtccgccacc
cagccgcccaaggagaacctgccggagagctcggctgctcgagaagctcctgctcctcca
gagagcctggagcgggagcagagcccggcgcttttgtccactggttactcagtgaatgct
caaactgggtcagctcaggtttcagcttctctcccgagaacttaccagaaaactgatacc
tccaggttaacatctgtggttacaccaagaccttttggtgtccactcaagaggaatctcg
tcacttccacggtcgttcacgatggatgatgctcagaaatacaatggagaagtagaaaaa
gctaaaagaactcaaactttgttcaccagcatttccttttcacaaccagactctgcacac
cctgtctccactggtgcattcagaagcagaggtgaggaagaagaggaggaaaaaggtgtt
cagtcaacacctcctcttagtttggcattgcctttaaagtcccaagaccaaaatgctgga
agtagtattcctaagccagagtatggcattcctcctgattctctttcacttgcatcttct
gcagaaactgcaagtctgacagagcctaaggattcaaaatccatggaacagtacagtgaa
ttgagaatcagtataaaccagagacctggccacagtcgcagctttgggtttacaacaaat
tggagttcttcaggagccgttgtacagacagttgaagaaggcagccctgcagcactttgt
cagctgcatgtagatgatgagatcattgctgtcaacggcacaaaggtttcacatatggac
tacagtcagtgggaagaagccatcagcagagcactagaaactggaaacctggtcatggat
gtcagacgatatggaaagaatgattggggcaaagacctgccttccctgccacgtgtaagg
cacaaaatcctcaatctcaccagtatggctaccaacattataggtacatctgaaaataaa
tggattgatgcaacttcgggagaaaaagtttcaaatgcttccaccatatccacaaaaaga
gatttctccagcagccttcaaagttctgatacagaaacaaaattgataaatggaatgcaa
ggagatcttggctctaatgaacaaagagcatctgaacctatttctttgaaaaacttaaaa
aggcggtcacaattttttgaacaaggaggcccagagcctgcaatgcctgatcttccagtc
ccatccatcagcgctcctagccgtcgggtttgggatcaagaggaagagcgaaaacgacag
gaaaaatggcaaaaagagcaggaccgtttgttgcaggagaaataccaacgagaacaagag
aaactgagggaagaatggctacgagctaagcaagaagcagaaaaagagagctccaagtat
tttgatgaggagcagaccgttctaaccctaaatacaacatccgtcacttcccaggctcca
cctgtgtccagctggagagcaagccctgaagcaaatgctctcgaggagccagaacgagat
ggagaaaacgagctggcagcaagctcactgcacgaggaagaaggaaggaggaggcttcag
gaggaacagagtatccaggaagaagcagccaggcattttgaacaagagcaggaactccaa
gagctggagctcgagagacaacgtaaagagagggagcagcagcacgctgaggagcagagg
cggcaggcagagatggaggagcagaggcagcaggcagaaaagcagagggaggtgtcagtg
gaggtgcctcagtaccaaagacattacgagcgctatgaagtatctaaaacaatagaggaa
cgagctggccaccctgtcattgataggcattatgagcgttatgaagtttctaaaaccatt
gaggagcagcctggccagtcatttgctcacaggaataagtcaaagtcaacaacagaactg
aatgaatttaacacaatcagaaatggtacccagagcaagtattctgagaggtcctggaac
atgggtgagtcacagaagaagtctcagaaggagcaaaacctgtctgcagcagagttggag
agacagcaaatccttcaggaaatgagaaagaaaacatctctacacacggacagcagctgg
atcaggcagcgcagtgccagtatacataaggagcctgttagtctgtacagcagtagtatg
aggagaggggagtctttggacaatcttgattcttcaggaattaggtcatggaggcaccac
tcatggctgaaccagtctgcatcctcttcatctctatcttctagtcaagattttagtcgc
ccagtgtccacttcaaaccgagcctacatgtgcactccttcctccagcaaagcacctcct
gtggccacctctgcaagagccccctccacgacacagacagctcccagggctcagtctccc
ctctctgcttcccagtcagggtcccagacacgcagcaggtcagtcagtgggaagaaaatc
tgttcatactgtaataacattctgggcaaaggagcagccatgatcattgagtctcttggt
ctttgttatcatttacattgctttaagtgtgttgcctgtggacgcgaccttggtggatcc
cgctctggagctgaagtcaggatccgaaacaacaaactcttctgcaacgactgctatatc
agatttaaaactggacaaccaacctccatgtga
DBGET
integrated database retrieval system
