Pyrgilauda ruficollis (rufous-necked snowfinch): 121355893
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Entry
121355893 CDS
T07608
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pruf04147
]
121355893 (COL18A1)
00535 Proteoglycans [BR:
pruf00535
]
121355893 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121355893 (COL18A1)
Exosome [BR:
pruf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121355893 (COL18A1)
Proteoglycans [BR:
pruf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121355893 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121355893 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121355893
NCBI-ProteinID:
XP_041327656
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MAPPRLGFVLLLACCFSCSETQLLDWVWDSMKITGSPAVPGEGIPASPPTSAAAPAPSPS
PGMWGGEVAGNVTTPRQQEPDPATATPVGEGAAAKTTEQWDRNATGLVESTAWPSIAPLH
SMSPAPGQQVASSPTNDPQLLGTGTHKDPQLPASGTTEDLQLRGSGNSEDPQLLGSETSK
DPQLLWSGMTEDLQLRETGTTEHLLLLRMSTIEDAQFLGSVIPKDPQVLGTGTTEDLKLL
GSGTTENPQLLRMGTTEDLQLLGLGTTEDPQLLGMMSTTDLHLLVTGSTKDPQLLGTGIT
EDSQPLGTGTTEDPQLLGTRTTKVPQLPDMRTTENLQFLVMRNTELLRTVTTESPELLEN
TENPQFLRTVTTENPKFLGTGTPTAMETRVSLQRPAGLQPESLSAEISLLELIGDPPTEE
IHRIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSS
QSIIYVGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVV
LYLDCEEHERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQ
CEEEEDDAEVSGDFGSGMEGGQQPSGKVEGVPGLLDAVPVTSPPVVGGSGPRSGGGSPQQ
AERTRAEETLRVSMGGAGRKGEKGEKGERGLKGDSGTSGIVGPGSVKGQKGEKGDLGVKG
SAGFGYPGSKGQKGEPGDPGLPGTLSRHADGSLVEQVTGPPGTPGKDGAPGRDGEPGDPG
EDGKPGEMGPPGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSKNDKLTFIDM
EGSGFAGDLESLRGPQGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPM
GPQGPPGRDGEAGQPGPKGEQGDMGDLGLPGLPGPKGNKGEMGPAGPPGEMGLAGLPGPI
GPRGQPGPPGPPGPPGLGYEAGFDDMEGSGLSFTPGPPGPEGPQGVPGLPGVKGEVGSPG
EPGLPGPKGDAGIPGMDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGP
PGQVISVSSEDKSLMAFPGPEGRPGRAGFPGSVGPKGDQGSTGPQGAPGLKGEKGEPGVI
ISPDGTVVTAKVKGEKGEPGLQGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGD
PADALGLRGPPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPGFPGFHQFSGQKGEKGDTGP
PGPPGQFPYDVSHFGTSLRGDKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLP
GPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPG
PPGPPGTNGMSLGLQAMPTYQAMLSAAHELPEGSLVFLTDRQELYVRLRGGLRRVLLEEH
NLIPSSALDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPSATARPWRGDEVVANQHRLPEQ
PLLHHQHELINGYYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCF
QQARQVGLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLRDEVLFNNWEALFTGSGAPL
RTGARILSFDGRDVLRDAGWPQKSVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLAS
GKLLEQAASSCQHAFVVLCIENSFMTATKK
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttggggtttgtgctcctcctggcttgctgcttctcctgctccgaa
acacagctcctggactgggtttgggacagcatgaagatcacaggaagcccagcagtaccc
ggtgagggaatcccggcgtcgccgccaacctcagcagcggctccggctcccagcccatcc
ccagggatgtggggtggtgaggtggcaggaaatgtcaccaccccacggcagcaggagcca
gatcctgctacagcaacacctgtgggtgagggagccgcagccaaaaccacagagcagtgg
gacaggaatgccacagggctggtggagagcacggcgtggccaagcattgctcctctccac
agcatgtcacctgccccaggacagcaggtggccagcagccccaccaatgacccccagctc
ctggggacagggacccacaaggacccccagctgccagcgtcagggaccactgaggacctg
cagctccggggctcagggaacagtgaggaccctcagctcctggggtcagagacctctaag
gacccccagctcttgtggtcagggatgaccgaggacctgcagctccgtgagacagggacc
actgagcacctgctactcctgaggatgagtaccatcgaagacgcccagttcctggggtca
gtgatccccaaggatccacaagtcttggggacagggactactgaggacctgaagctgctg
ggatcagggaccactgagaacccacagcttctgaggatgggaaccactgaggacctgcag
ctgctggggttgggcaccactgaggacccacagctcctagggatgatgagtaccacagac
ctgcatctcctggtgacagggagcaccaaggacccacagctcctggggacaggcatcact
gaggactcacagcccttgggtacggggaccactgaggacccacagctcttggggacaagg
accaccaaggtcccacagctcccagacatgaggaccactgagaatctgcagttcctggtg
atgaggaacactgaactcctgaggacagtgaccaccgagagcccagagctcctggagaac
acggagaacccacagtttctgaggacggtgaccaccgagaacccaaagttcctggggacg
ggaactcctacagcaatggagacacgggtgtccttgcagagaccagcgggtctccagcca
gagagcctgagtgctgagatcagtctgctggagctgattggggacccaccaacggaggag
atccacagaatttatggccccgacaacaaccctggctacgtctttggtcccaacgccaac
acgggccaggtggcccggtaccacctgccaagccccttctaccgggacttctcgctgctc
ttccacatccagcccaccacgccccgggccggcgtgctctttgctgtcacggactcctcg
caaagcatcatctacgtgggcgtcaagctctcagagctgcgtgcgggccagcagcagatc
atcttctactacacggagccgggctcgcccagctcctacccagctgccaccttcaccgtg
cccactctgctcaaccagtggacgcgcttcgccatcagcgtggaggaggaggaagttgtc
ctctacctggactgtgaggagcacgagcgtgtccgcttcgagcgctccccggatgagatg
gagttggaagagggctccgggctctttgttgctcaggctggaggggctgacccggataaa
taccagggggtgattgcagatttgaagctccgaggggaccctcgggcagccgagcgccag
tgcgaggaagaggaggatgacgcagaggtctctggggattttggcagtgggatggaaggt
ggacagcagccctcaggcaaggttgagggtgtcccagggctgctggatgctgtccccgtg
acctccccccctgtggtggggggcagtggcccgaggagtggcgggggatccccgcagcaa
gccgagaggaccagagcggaggagacgctgcgggtctccatgggaggcgccggtcggaaa
ggcgaaaagggggagaagggggaacgtggcttgaaaggggactcagggaccagtggcatt
gtagggccaggcagtgtcaagggtcaaaagggggagaaaggagacctgggtgtcaagggc
agtgctggatttggctatcctggctctaagggccaaaaaggagaaccaggtgaccctgga
ctgcccgggaccctctctcggcatgctgatggctcgttggtggagcaggtcactggccct
ccagggacaccagggaaggacggagcccctggcagggatggcgagcctggagatcctgga
gaggacggcaagcccggtgaaatggggcccccagggttccctgggatgccgggggagccg
ggcctgaagggggagaagggtgacccaggtgtggggccgaggggaccccctggaccacct
ggccctccgggaccaccgggaccctcctccaagaacgacaagctgaccttcatcgacatg
gagggctctggcttcgctggtgacctggagagcctgcggggtccacaagggccacctggt
cccccagggccacctggcgtgcccggtttgccaggggagccaggacggtttgggatgaac
cgcacagacctgccgggaccacctgggctcccgggcagggacgggatccccgggccaatg
ggtcctcagggtcctccaggaagagatggggaggctgggcagccggggcccaaaggagag
cagggcgatatgggtgaccttggcctccctggcctaccaggacccaagggcaacaaagga
gaaatgggaccagcaggacccccaggagaaatgggcttagctggccttcccgggcccatc
ggaccccgagggcagccagggccccccggccccccgggaccaccggggctgggctacgag
gctggatttgatgacatggagggctcggggctgtcatttacccctggaccaccagggcct
gaaggaccacagggtgtgccgggactgccgggggtgaagggagaggtcggcagccccgga
gagcctggcttgccgggaccaaagggagatgctggcattcctggcatggatggccgccct
ggcctggagggcttccctggaccacagggacccaaaggtgacaaaggcagcaccggtgag
aagggagagcgaggccaagatggagtggggctacctggcccccctggcccacctggtccc
cctggacaggttatcagtgtctccagtgaagataagtccttgatggcttttcctggtcca
gagggcagaccaggccgcgctggcttcccgggttcagtgggaccaaaaggagaccagggg
tcaactggtccccagggtgccccagggttgaagggggagaagggggagcccggcgtcatc
atcagccccgatgggactgtggtcactgccaaggtgaaaggagaaaagggggagccaggg
ctgcagggccccatgggaccatcgggtcctccaggacgagcagggatgaagggagagatc
ggctttccaggcagacccggacgtcctggcatgaacgggctgaagggcgagaagggtgat
cctgcagacgcgctgggcttgcggggtcccccaggccccccaggaccccctgggccccct
gggccacctggcagcatagtctacaacaatggtaataccttcagtgactccagccacccg
gggttccctggtttccaccagttctcaggacaaaagggagagaaaggtgacactggaccc
ccaggacccccaggccagttcccctatgatgtgagtcactttggtaccagcctgcggggt
gacaagggggatgcaggtcccaagggtgagaagggcgagccaggcagcaccccactctac
agtcccggagtctctggacttccagggcctccagggccccagggataccccgggctgcca
ggtcccaagggggacagtattgttgggccaccggggcctccaggacctcagggtccccct
ggtatcggatacgaggggcggcagggcccccctggccctcctggtccgcctgggccaccc
tccttcccaggtccccacagacaagctgtcagcatccctggacccccaggaccaccagga
ccccctggaccaccaggcaccaatgggatgtccttggggctccaggccatgcccacgtac
caggcgatgctgagtgctgcacacgagctgcccgagggcagcctcgtcttcctgacggac
cggcaggaactctacgtccgcctgcgtgggggcctccgcagggtgctgctggaggagcac
aacctgatccccagttcggctctggacaacgaggtgtatgacaagccacccactctccac
tacgctggcccccagccccgcgggcccctgcacccactccgcaaccacgtcccctcagcc
actgcccgtccctggcgtggggatgaggtggtggccaaccagcaccgcctgcccgagcag
cccctgctccaccaccagcacgagctcatcaatgggtactacatccaccgccggccagat
cctgcccctgtggccgcccatgtgcaccaggacttccagcctgctctgcacctggtggcc
ctgaacaccccgctgagcggtggcatgcgcggcatccggggcgccgatttccagtgcttc
cagcaagcccgtcaggttgggctggctggcaccttccgcgccttcctgtcctcgcgcctg
caggatctctacagcatcgtgcgcagggctgaccgtgccaccgtccccattgtcaacctc
cgggatgaagtgctcttcaataactgggaagcccttttcacgggcagcggggccccgctg
agaaccggcgcccgcatcctctcctttgatggccgggatgtcctgcgggatgcgggatgg
ccacagaagagtgtctggcatggctcggatgccaagggtcggcgcctgcccgagagctac
tgtgagacatggcggacagaggagcgtgcagtcaccggccaggcttcctccttggcctct
ggaaaactgctggagcaggcagccagcagctgccagcacgcctttgtcgtcctctgcatt
gagaacagcttcatgactgccaccaaaaagtga
DBGET
integrated database retrieval system
