Pyrgilauda ruficollis (rufous-necked snowfinch): 121355974
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Entry
121355974 CDS
T07608
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121355974 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121355974 (CPSF2)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121355974 (CPSF2)
U7-dependent histone pre-mRNA processing factors
121355974 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
121355974
NCBI-ProteinID:
XP_041327876
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDAEEDIDQPTLHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPTDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEDLE
MQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgattatcaagttgactacgctctcgggggtgcaggaggaatctgccctctgc
tatcttttgcaagtagatgagtttcgttttcttttggactgtggctgggatgaaaacttt
tctatggatattattgattctctgaggaagcatgtacaccaggttgatgctgttcttctt
tcccaccctgatcctctacaccttggtgcacttccatatgcagttggaaaaatgggattg
aattgtgccatttatgcaactattcctgtatataaaatgggacagatgtttatgtatgat
ctctaccagtcccgccataatactgaagatttcacactctttacattggatgatgtagat
gcagcctttgataagatacaacagctgaagttttctcagattgtgaacttaaaaggcaaa
ggacatggtttgtcaatcacaccattgccggctggtcacatgataggaggcacaatttgg
aagattgtcaaggatggggaggaagaaattgtttatgccgttgatttcaaccacaagagg
gagatccatctgaatggatgttccttggaaatgttgagcaggccttcattgcttattaca
gattcatttaatgctacttatgtacaacccaggaggaagcaaagggatgaacagctgctg
actaatgttttggagacattacgaggtgatggaaatgtattaatagccgtggatacagca
ggcagagttctggagcttgctcagcttcttgatcagatctggagaacaaaagatgcagga
ttaggagtctactctcttgcacttttgaataatgtcagctacaatgtagtggaattctct
aaatcacaggttgaatggatgagtgacaagttgatgaggtgctttgaagacaagagaaac
aacccttttcagttccgccatctctccttatgtcacagtctgtctgatctggctcgagtg
cctagtccaaaagttgttcttgcgagtcagcctgacttggagtgtgggttttctagagat
cttttcattcagtggtgccaggattccaaaaactccataattttaacttatcgcactaca
cctggaacattagcacgattcctgattgataatccttctgaaaaagttatagatattgag
ttgagaaaacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggaaaaa
ctaaagaaagaggcagctaagaagttagagcagtctaaagaggcagatattgattccagt
gatgagagtgatgctgaagaggatattgatcagccaactttacataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaaaaaatct
tacccaatgtttccagctcctgaagaaagaattaaatgggatgaatatggtgaaattatc
aaacctgaggattttctagttccagagcttcaagcaacagaagaagaaaaaagcaaatta
gagtctggtttgacaaatggagaggagcctacggaccaggatttatcagatgttcctacc
aaatgtatttctgcaacagaatccatggaaattaaagccagagttacatacattgactat
gaaggacgttcagatggggactcaattaaaaaaattattaaccaaatgaaaccaagacaa
ctggtgattgtccatggaccacctgaggccagtcaggaccttgcagaatgttgcagagct
tttggtggaaaagatattaaagtttacatgcccaaacttcatgaaactgtagatgctaca
agtgaaactcacatttaccaggtcaggttgaaagattctcttgtcagctctcttcagttc
tgtaaagccaaggatgctgagttggcttggatagatggcgttctggacatgagggtttca
aaagtggatactggagttattttggaagagggagagttgagggaagatgaagacttagaa
atgcaagtggatgtgccttcttcagactctagtgtgattgcacaacaaaaggccatgaaa
agcctctttggtgatgatgacaaggagatgtgtgaggagagcgaaatcattccgactttg
gaacctctgccacctcatgaggttcttgggcatcaatctgtgtttatgaatgagccaaga
ctgtctgacttcaagcaggttctcttgcgggaaggcatacaagctgaatttgttggagga
gtgcttgtgtgcaacaacctggtagctgtccgcaggactgaaacagggcgtattggattg
gaaggctgcctctgccaggacttctacaggataagagaccttttatatgagcaatatgct
attgtctaa
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