KEGG   Pyrgilauda ruficollis (rufous-necked snowfinch): 121356096
Entry
121356096         CDS       T07608                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
pruf  Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04510  Focal adhesion
pruf04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pruf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121356096 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121356096 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pruf00536]
    121356096 (COL2A1)
Glycosaminoglycan binding proteins [BR:pruf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121356096 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 121356096
NCBI-ProteinID: XP_041328119
LinkDB
Position
Unknown
AA seq 1514 aa
MPGHRPAPGGRRSPRSEPAGTGAAPGAAPRPGLLLLLLLCLAAAAAAQDRDLPEAGSCLQ
DGHRYSDKDVWKPEPCRICVCDTGTVLCDEIMCEELRDCPSPEIPFGECCPICPSEQPSG
KPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTP
GNPGPPGPPGPPGPGWVSSSFPWQNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPG
PSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQG
ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERG
RPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRG
ESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKG
QTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPG
NRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQG
KVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPG
KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPG
LVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPG
ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSG
AAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPG
PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARG
DAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERG
FPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGSPGSDGPPGRDGAAG
VKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQG
PRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSG
KDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGP
DPGRYMRADEAAPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDW
KSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETI
NGGFHFSYGAEELAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLI
QGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGP
EQEFGVDLGPVCFL
NT seq 4545 nt   +upstreamnt  +downstreamnt
atgcccggacaccgcccggcccccggcggccgccgctcgccccgctcggagcccgcaggc
accggagcggcccccggagccgccccccggcccgggctcctgctcctcctcctcctctgc
ctcgccgccgccgccgccgcgcaggaccgagacctccccgaggctggcagctgcctgcag
gacgggcaccgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtg
tgcgacacggggacggtgctgtgcgacgagatcatgtgcgaggagctgcgggactgcccc
agccccgagatccccttcggagagtgctgccccatttgccccagcgagcagcccagcggg
aagcctggccccaagggacagaaaggtgaacccggtgacatcaaagatgtcgtaggaccc
cgaggacccccgggcccgcagggccccgcaggtgagcagggacagcgaggggaccgcggc
gagaagggcgagaagggcgcccccggcccccggggcagggatggggagcccggaactcca
ggaaatcccggcccccccggaccccccggacccccgggacccgggtgggtttcatcctcc
tttccctggcagaacttcgcggctcagatggctgggggcttcgacgagaaggctggaggg
gctcagatgggcgtcatgcagggacccatgggccccatgggaccccgcggcccccccggc
ccctccggctcccccggtccccaaggattccaaggcaaccccggtgagcccggcgagcca
ggcgctgctggtccgatgggtccccggggacctccgggacctcctggcaaacccggcgac
gatggcgagaccggcaaacccgggaaatccggcgagcgcggcccccccggcccccagggc
gctcgtggcttccccgggacccccggcctgcctggagtcaaaggccaccggggctacccc
ggcctggacggcgccaagggagaggcgggagcacctggagccaagggcgagtccggctcc
ccgggcgagaacggctcccccggccccatgggtccccgcgggctgcccggagagcgagga
cgccccggcccctcgggcgctgcgggcgctcgtggcaacgacggcctcccgggcccagcc
ggaccccccggtcccgtcgggcccgcaggagcccccggcttccccggcgcccccggctcc
aagggtgaagcgggtcccaccggagcgcgaggacccgagggtgcccagggaccccgcggg
gaatccgggacccccggctcgcccggccccgccggcgcccccgggaacccagggaccgac
ggcatccccggagcgaagggatcggcgggcgctccaggcatcgccggcgctccaggattc
cccggcccccgcggcccacccggaccccagggagccaccggcccactgggccccaaggga
cagacgggcgagcccggcatcgcgggattcaaaggcgagcagggacccaagggagagacg
ggccccgcaggaccccagggtgcccccggaccggccggggaggaagggaagagaggagcc
cgcggagaacccggagctgccggacctttggggccacctggagagaggggagctcccggc
aaccgcggattccccggccaggacgggctggccggccccaagggggccccgggcgagcgc
ggccccgctggcctggccggccccaaaggagccaccggcgaccccggacgccccggagag
cccggcctgcctggagccaggggtctcacaggtcgccccggggacgctgggccccaaggc
aaagtcggccccacaggtgcccctggcgaggacggacgtcccggaccccccggcccccag
ggggctcggggccagcctggcgtgatggggttccctggtcccaaaggtgccaatggtgag
cctggaaaagctggtgaaaaaggacttcctggagcaccggggctgaggggacttcctggc
aaggacggagagaccggagccgccggacccccaggacctgctggcccggcaggggagagg
ggagagcaaggagcccccggcccctccggcttccagggactgccagggccaccaggtccc
cccggtgagagcggcaagcccggagatcagggcgttcctggagaagccggagcccccggg
cttgtgggtcccaggggtgagcgcggcttccccggcgagcgcggctctcccggcgcccag
ggcctgcagggcccccgcggcctccccggcacccccggcaccgacggacccaagggtgcc
accggccccgccggccccaacggcgcccagggacccccggggctgcaggggatgcccggg
gagagaggagccgctggcatcgccggtcccaagggggacaggggagacgttggagagaag
ggacccgagggagcacctggaaaggacggagctcgcggtctgaccggtcccatcggcccc
cccggccccgctggccccaacggcgagaagggcgagtccggcccccccggcccgtccgga
gccgccggtgcccgcggtgcccccggagaacgcggagagcccggagcccccggccctgcc
ggattcgctggaccccccggcgccgatggccagcctggagccaagggcgagcagggggag
cccggccagaagggtgacgccggagcccccgggcctcagggtccttccggggctcctgga
ccacagggtcccacaggtgtcaccggtcccaaaggagcccggggcgcccagggacccccg
ggagccaccggattccccggagccgccggacgtgttggaccccccggccccaatggtaac
cccggcccgcccggaccccccggctccgcgggcaaggacggccccaagggcgcccggggc
gacgcgggacccccgggccgagcgggggacccggggctgcagggccccgccggccccccc
ggagagaagggcgagcccggcgaggacggcccagcgggtccggacggtccccccggtccc
caggggctggcaggacagcgcggcatcgtggggctgccggggcagcgcggcgagcgcggc
ttcccggggctgcccggaccctcgggagagcctggaaaacagggagcacctggatctgcc
ggcgaccggggaccccccgggcccgtgggaccccctgggctgacggggccagctggagag
cccggcagggagggaagtcccggctctgacggacccccgggcagggatggggcagcagga
gtgaagggtgatcgtggcgagaccggcccagtgggtgctcccggtgctcccggcgctccc
ggcgctccgggccccgtgggacccactggaaaacagggagacaggggagagacgggtgct
cagggtcccatgggtccctccggccccgctggcgcccggggaatgccgggtccccagggg
ccacgcggtgacaaaggcgaggcgggcgaggctggagagcgcggcctgaaggggcaccgg
ggcttcaccgggctccaggggctgcccgggccccccggtccttctggagaccagggtgct
gccgggcccgcgggtccctccgggcccaggggtccccctggccccgtgggcccttcaggc
aaggacggctccaatgggatgcctgggcccatcggcccccctggaccccgcgggaggagc
ggcgagcctggcccggcgggcccccccgggaaccccggcccgcccggcccccccgggccc
cccggcaccggcatcgacatgtcggcgttcgcggggctggggcagcccgagaagggcccc
gaccccgggcgctacatgcgggcagatgaggcggcgccggggctgcggccgcacgacgcc
gaggtggacgccaccctcaaggccctcaacaaccagatcgagagcatccgcagccccgag
ggctcccgcaagaacccagccaggacctgccgagacatcaaactctgccaccccgactgg
aagagcggcgattactggatcgaccccaaccagggctgcaccctggatgccatcaaggtc
ttctgcaacatggccacgggggagacgtgcgtgtaccccagccccggcagcatccccagg
aagaactggtggagcagcaaggccaaggagaagaagcacgtctggttcgccgagaccatc
aacggcggcttccacttcagctacggcgctgaggagctggcgcccaacacggccaacatc
cagatgaccttcctgaggctgctgtccaccgagggctcccagaacgtcacctaccactgc
cgcaacagcgtggcctacctggacgaggagtcgggcagcctgaggaaggctctgctcatc
cagggctccaacgacgtggagatccgcgccgagggcaacagcaggttcacctacagcgtg
ctggaggacggctgcacgaaacacaccgggaagtggggcaggactgtcatcgagtaccgc
tcgcagaagacctcgcgcctgcccatcgtggacattgcacctatggacattgggggaccc
gagcaggagtttggggtcgacctcggccccgtctgcttcttgtaa

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