Pyrgilauda ruficollis (rufous-necked snowfinch): 121356170
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Entry
121356170 CDS
T07608
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04510
Focal adhesion
pruf04512
ECM-receptor interaction
pruf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121356170 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121356170 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121356170 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pruf04147
]
121356170 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121356170 (COL4A2)
Exosome [BR:
pruf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121356170 (COL4A2)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121356170 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121356170
NCBI-ProteinID:
XP_041328239
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFLCQDTGLLLILMEVVLSAVKVDAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGQPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDPGTPGFSGFPGSIGVQGPKGQKGEPYIVAPEI
ISRHRGDPGDSGFMGFPGPPGTLGIQGPIGPRGQRGRPGPPGPPGPPGPQGNRGLGFYGE
KGEQGPPGPPGPPGLPTRELTGVPPDKHKGERGDPGPRGEAGIPGVLLFPLEKGEEGIMG
YPGERGLPGIPGFPGLSGERGIPGFDGPPGGHGPRGSKGEPGEMGPPGPDSYFPSRIPRK
GARGDPGFPGVSGLPGDRGDEGDRGLPGLPGFSDADADKPGLPGEMGPKGEKGEIGSPAY
FAGPPGLPGKDGLPGIRGPPGPVGAPGPLFGLKGREGTPGRFGTQGFPGPRGRKGPKGEE
GDCTRCLLGEELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPAG
FPGRKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDAIRGF
PGDPGYPGELGPKGFPGEAGLPGEGFPGPKGFRGPPGDQGQAGIPGSPGLPGLPGEPGQI
DCGQVIEDFPRGDATEPIWSGAGCVRPPKGSQGKPGVPGPTGAKGASGFPGDPGPMGFPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAPAGSRGDVGLPGFPGLKGAPGDQGVPGTRGADGSPGLPGPKGDPGPQGLPGLMGLPGT
PGAHGFPGPPGNRGPDGGPGSQGTLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGHTGL
PGIRGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMTGLKGRPGIKGIKGEFGPLGARGD
KGSQGARGFKGDRGDQGPPGEPPKLMPSMMMEVKGEKGDAGERGTKGLFGLKGSKGMPGL
PGKTGTPGSPGHPSYVAGVKGDIGAKGLTGVKGYPGPAGSPGIRGFPGTTGVRGEKGIPG
ISGHFGTPGSHGEIGDRGDTINLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGNPGTPGLTGQKGAPGWPGLPGQAGQPGFRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGALGDKGEAGDPSRVEGSRGPPGQKGERGVPGVP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGVPAPPGSKGESGES
GRTGEIGPKGSRGDPGLSGRPGLPGFPGPKGPRGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGFRGSPGE
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGLEGQPGRPGSPGPAGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagtgcacgtattttcctttgtcaggatacggggcttttg
ctgatcctgatggaagttgtgctgtcagccgtcaaagtggacgctggtggaaagaaatac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggactccttggatcacagggattcactggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggacagccaggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccccggggcagatggc
attcctggtcatccaggccagccaggaccaagggggaaaccaggccatgatggctgtaat
gggacagcaggtgaccctggtgacccgggaactcctggtttctctggtttccctggtagc
attggagtccaagggcccaagggccagaagggggagccgtacatagtagcgccggagatc
atcagccgacacaggggagatcctggggattcagggttcatgggttttccaggacctccg
ggtacgctgggtattcaaggacccattggtccaagaggacagcgaggaagaccaggacca
ccaggacccccagggcccccaggaccacaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggccccccaggtcctccaggtccacctgggcttcctacaagagaactg
acaggtgtcccccctgacaagcacaagggtgaaagaggagaccctggaccaagaggagaa
gctggaattccaggtgttcttctctttcctcttgaaaaaggtgaagaagggataatggga
tacccgggagaaaggggactgcctggcatccctggttttccaggactcagtggagaaaga
ggtattccaggatttgatggtccacccggtggccatggtcccagaggaagcaagggggag
cctggcgagatgggtcctccagggccagattcttattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggtttcccaggtgtttctggactcccaggagaccgaggagat
gagggagatcgtggattgcctggtcttcctggattttctgatgcggatgcggataagcca
ggcttacccggagaaatgggaccaaaaggtgaaaagggtgaaataggatctcctgcttat
tttgcgggaccgcctgggcttccgggtaaggatggcttacctggaattcgtggtccacct
ggtcctgttggagcgcctggtcctctctttggattaaaaggacgagagggaacaccaggt
agatttggtacacaaggtttccctgggccaagaggacgaaaaggacctaaaggtgaagaa
ggggattgcactagatgccttttgggtgaggaactcagaaggggctctactggcccccgt
ggtcctcctggctttccaggaacccctggccagcctggaaggaaaggagaacctggtgat
caaggaccacatggtcttcctggctaccctggagcaaaaggattttcgggtccagctgga
tttcctggacggaaaggagaaaaaggagactctttacacataactacaaaaggcaccaaa
ggaatccgaggagatcctgggctgcctggaatcagaggtgaagatggtttcccaggcaga
gatggattagatggtttaccaggacagcctggccttccaggtgatgctatcagaggtttc
cctggtgatcctggttatccaggtgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaaggcttccggggtcctccaggtgaccaagga
caagctggaatcccaggatctccaggtctgcctggtctgccaggagagcctggccaaata
gactgtgggcaggtcattgaagactttcctagaggagatgcaactgaaccaatatggtca
ggtgcaggctgtgtaaggccaccaaagggatcccaaggaaagccaggagtgccaggaccc
acaggtgcaaaaggtgcaagtggattcccaggtgatccaggtccaatgggtttcccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
ggacccaggggagacagaggcccaaatgggctgcctggactgcagggacacccaggcctt
acagggaaatctggagctccaggagcaccaggaccgaagggccttcctggtgacgtgttt
ggagcaccagcagggtcccgaggggatgtcggcctccctggcttcccagggctgaaaggt
gcaccaggagatcaaggagtaccaggaactagaggagcggatggtagcccaggtttgcca
ggacccaaaggagatccagggccacaaggtctccctggtttgatgggattaccaggaaca
ccaggagcacatggattcccaggtccaccaggaaaccgtgggccagatggtggccctggt
tcccaaggaactctcggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccccgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtcacacaggactg
ccaggtatacgtggtgtgactggtccacctggcataagtggaatggatggctttccagga
gataaaggctcaagaggttcacccggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggaatcaagggagaatttggcccacttggggcacggggagat
aaaggctcacagggtgcacgtggcttcaaaggtgaccgtggggatcaaggccccccagga
gaacctccaaagctcatgcccagcatgatgatggaagttaaaggtgaaaaaggagatgct
ggagaaaggggcacaaagggattatttggcttaaaaggtagcaagggaatgccaggcctt
cctggaaagacaggaaccccagggtcccctgggcatcccagctacgtggctggtgtgaaa
ggagacatcggcgcgaaagggctgacaggtgtgaaagggtatcctggtcctgctggttct
cctggcatcagaggcttccctggcaccacaggagtcagaggagaaaagggcattccagga
atttcaggccattttggtactcctggctcacatggagaaataggtgatcggggagatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccaggcttaacaggc
ataagaggaggtgtgggaccaaaaggagaaggtggtgatcctggtttccctggcattgaa
ggcctcaagggcacgcagggtgtccctggctctgtgggacaggaaggtttgccaggactg
gttggccccccagggcagcaaggaaaccctgggactcctggacttacaggtcaaaaggga
gctcctggctggcctggcttaccaggacaagcaggccagcctggcttcagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatgggtac
ggctctgcaggtttcccaggtgcactgggtgacaaaggagaagctggagacccaagcaga
gtagaaggcagccgaggacctccaggccagaagggagagagaggtgttccaggagtccca
ggaccctttggtattcctgggcaggaaggatttccagggcctcctgggatttcaaatata
tcaggatatcctggtgataaaggctccccaggtctagatggagtgccaggctatccagga
ccacaggggcagcctggagtacctgctccaccaggaagcaaaggagaaagtggagaatca
ggtaggactggagaaattggcccaaaaggaagtagaggtgatcctggattatcaggaaga
cctggcctgcctggattccctggaccaaaaggtcctaggggtgaacaaggtgtcattggc
tttatgggcacagtaggatttccaggtgatctgggacccattggacccaagggagataga
ggagtaacaggcttccagggacctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaaatataggacctcagggaagccca
ggagatatgggacctcagggcccaccaggagatccaggtttcagaggctcaccgggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggggaacaagga
ggaatgggatttcagggtccggtgggacttgaaggtcagccaggccgccccggcagcccg
gggccagcaggcatgccgggtcgcagcgtcagcatgggctacctgctggtgaagcacagc
cagtccgaccaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagc
ctactgtactttgaaggacaagagaaagcacacaaccaggatctagggctggctggctca
tgtttgtctcgctttagcaccatgccattcctctactgtaaccctggggatatttgttac
tatgcaagtcgaaatgataaatcctactggctctcaactacagcacctcttccaatgatg
cccgtggcagaagaagacattaagccatacatcagtcgctgctcggtctgtgaggcccca
gctgtggcaattgctgtccacagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacagtccctggtttctcctgggagctgcctggaagatttcagggcgactcctttcatc
gagtgcaacggcgcacgcggaacctgtcactactttgcaaacaaatacagcttctggctc
accaccatcgaccagcccttccagagcaagccctcgggagacacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaacttataa
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integrated database retrieval system
