KEGG   Pyrgilauda ruficollis (rufous-necked snowfinch): 121356172
Entry
121356172         CDS       T07608                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pruf  Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04382  Cornified envelope formation
pruf04510  Focal adhesion
pruf04512  ECM-receptor interaction
pruf04518  Integrin signaling
pruf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pruf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121356172 (COL4A1)
   04518 Integrin signaling
    121356172 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121356172 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121356172 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    121356172 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pruf04147]
    121356172 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:pruf00536]
    121356172 (COL4A1)
Exosome [BR:pruf04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   121356172 (COL4A1)
Glycosaminoglycan binding proteins [BR:pruf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121356172 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 121356172
NCBI-ProteinID: XP_041328242
LinkDB
Position
Unknown
AA seq 1669 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGDVIGLISPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPMGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEKGIPGVPGSGFKGDRGDPGQPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGTKGDKGERGYPGPPGRMIDAGPIDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGSPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGEKGEACTLCDKVGPPGLPG
PQGPPGPSGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGPKGEPGDFTYDSILK
GEKGDPGFPGQPGTPGREGRPGKDGFPGPQGPKGTPGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGTPGLPGTPGPVGDRG
FPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGAPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGSPGLPGDVGPKGDLGPPGVPGVPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggctgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggacttcagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggcttcccaggaaacccaggccttcctggcatt
ccgggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgacgtgattggtcttataagtcctggtgtg
ctaaaaggtgaaaaaggatttcctggccaacctggactgcctggtccacccggagcttca
gggtttcagggaccaatgggaccaatgggtcctccaggagagccaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggagtaaggggccccccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggcgatccaggtgaaaagggcgaaaag
ggaattccaggggtgccaggttcaggtttcaaaggagacaggggtgaccctgggcagcct
ggtccacgtggcaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
ccaggagggtttgggattccaggacgacctggggagcctggcacaaagggtgacaaaggg
gagcgaggttatccaggacctccaggaagaatgatagatgctggaccaatagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaatcccaggacctccaggtcgaccagttccagacagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctcctggc
ttcccttcacctggaagccctggaagagatggtttcccaggtccccctgggttacctggc
ccaccaggacctccaggcaaaacagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccagggagagatggatttccaggagagatgggagagaaa
ggtgaaaaaggtgaagcctgtaccttgtgtgataaagtaggacctcctggacttccagga
cctcaagggccaccaggaccatcaggttttccaggacaagcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtgcctggtccccccggcactccaggactt
atgggcagccctgggccaaaaggagaacctggagattttacttacgattctattctgaaa
ggtgaaaagggagatcctggtttcccaggacaaccaggcactcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggaacaccgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtgctgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccgggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatcgctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttc
caaggtcagcctggctcacctggtctgccaggaaccccgggaacccctggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctacctggc
cctaagggattgccagggccccctggcccagctggcatccctggagaaaagggaaatcca
ggactgcctggtttacgtggtgagcagggctttccgggcatacctggacagcagggattc
agaggtgaccctggtctcccaggtctccaaggcttgcagggccctccaggtgcaccaggg
ctgggccctccaggattgccaggacctgctgggcagccaggaccccagggaccaccagga
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
cctaaaggggataaaggtagcccgggccagccaggagtcccaggctctgtgggattacct
ggcctgccaggtccacagggggctgttggactgaaaggatcagcaggacccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
tttcctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagagat
ggtgaacccggtactcctggacaaccaggaccaaaaggtgatcaaggccccccagggtac
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtctgccagga
acacctggagaaaagggtcttcctggagtaccaggtgcaccaggcacaccagggttccct
gggcaaaaaggcgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
ggggctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcagggtttccaggaagccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggaattccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggtgccattggtcagaagggtgaaccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcctggt
gcaaagggagacaaaggtgcgaaaggtgaagtgggttttccaggatccccaggaagtcca
ggcatcccaggcctgaaaggggaaccaggatatgcaggtccaccaggccctaaagggagc
caaggtcttcctgggctcccaggaagtgcaatcgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttaccaggtccaacagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcaatggctggccagggactcctgggggtccg
ggaatgaaaggtgatccgggtttccaaggactgccaggtagtcctggtttgccaggagat
gttggtccaaagggtgatctcggacctccaggagttccaggtgttccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtccttttcagcttattaaaggggatcctggc
ttacctggacctgtaggaccagttggtctcaaaggattcccaggacttccaggtcccaaa
ggacaacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcaacctgggcagaaaggagaagctggtccttttggtcccccagggcccagagga
tttccaggtccacctggccctgatggcttgcctggggctatgggcccaccaggggcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccattgaagagccatcgtgt
ccgtttggaacaaggctgatttaccacggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctaggcacagcaggaagctgtcttcggaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgagcccatgccaatgaatatggctcctatcactggtgataac
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccatgtcctgaaggctggagctcactttggattggt
tactcctttgtcatgcacaccagtgctggtgccgagggctctggccaggccctggcctcc
cctggttcctgcctagaggagttccgcagtgctcccttcatcgaatgccatggccggggc
acctgcaattactatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaggaaaccgactccctcaaccttgaaagccggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgaggaaaacataa

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