Pyrgilauda ruficollis (rufous-necked snowfinch): 121356482
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Entry
121356482 CDS
T07608
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121356482 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121356482 (SF3B1)
03036 Chromosome and associated proteins [BR:
pruf03036
]
121356482 (SF3B1)
Spliceosome [BR:
pruf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121356482 (SF3B1)
Complex B
121356482 (SF3B1)
Complex C
U2 SnRNP specific factors
121356482 (SF3B1)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121356482 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
121356482
NCBI-ProteinID:
XP_041328887
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatactatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacgcctaaaaaattgtccagttgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactccaggtgccaccccaggctcaaaaatctgggatccaactcccagccacacacca
gcaggagctgcaacgcccggccgagacacgcctgggcacgcaacaccgggacacggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccaggccatggcagtggctgggctgagacacctcgtacagacagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagcaaaaggaagtcacgctgggatgaaacacctgcg
agccagatgggtggcagcactcctgttctgacgcctggcaaaacacccattggaacacca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctcccgcccccagctggttacgtgccc
atccgtactcctgctcggaagctcacagcgactccaacgcccctgggaggtatgacaggg
ttccacatgcagacagaggaccgcaccatgaagagtgttaatgaccagccatctggcaac
ctgccgttcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
atcaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattactgacaaagct
cgggagttcggagcagggccgctgttcaatcagatcctccctctgctgatgtcacccaca
ctcgaagatcaggagcggcacttgcttgtcaaagtcatcgacagaattctctacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcgggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgccgttgttgcgtctgctctgggcattccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgtacc
atcagtgctttggccattgctgctttggccgaggcagccactccctatggcattgagtca
tttgattctgtcctgaagcccttgtggaagggtatacgtcagcacagaggaaagggtttg
gcggcatttctgaaggcaattggttacctgatcccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaaccattgagaagataatgggaaatctgggggcagcagac
atcgatcacaagctggaagaacagctcattgatggtattttgtatgccttccaggaacag
acaacagaggattctgtgatgctaaatggttttggcacagtggtcaatgctctaggcaaa
agagtgaaaccctacctgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagctaaagtgaggcagcaggctgctgacctcatctctcgcactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtcaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgagtacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattctcttaatcacttgttaaattatgtctggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtcgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
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integrated database retrieval system
