Pyrgilauda ruficollis (rufous-necked snowfinch): 121357007
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Entry
121357007 CDS
T07608
Name
(RefSeq) protocadherin Fat 4-like
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Motif
Other DBs
NCBI-GeneID:
121357007
NCBI-ProteinID:
XP_041329860
LinkDB
All DBs
Position
Unknown
AA seq
2479 aa
AA seq
DB search
MARTRSRDILSIAANPHKDHKSCTEVTTINCDIPPSPLVLSSFLDGYTGVIEWITDIPPN
VHLKLQEYVFPEHLKYVELVTDSQSSNATVRTRRALDVEELETDEIENGRNVKLIDVNDN
APEFQQANYSASVSEVAGITSTVVKVEAEDKDISPEFSILTYSLWGPNSDYFSIREGDGN
VMVKKPLDYNEVSFFNLTVQAKEKFGDQSATASLIINVEDYDTLNPYFSQSTYNGNISEN
QVGPLAVLPEVLAQDGDKGINEKIIYSIKLVNPPAYNNSFSINDAGVLEVKTSIDREICP
NLVVGIQAAQQDKIFKTADAVVLVTIGDENDNSPVLSQPSYDVSLPENFPNGMEVLQITA
SDKDEGGFQGTLSLTPDDSPFQLSPAGILTVRNSTLLDRERVPSIHLQETARDHLPPHRN
VSSPINIVLLDENDNSPAFTGTPYRRDIFLNMTAGMDILQVAAADPDDGINGEISFILAG
GNEDGHFELDASTGQISLKTVIPLGIDQRKKFVLWITATDGGTIPRSSSVPVEINVFGDS
RPQFTQKTYSVSVEEELDPPVEVAQVKYEASNPHILEFRVLTESASFAIDDKGVISTQTK
LDYESHKNYTLNISLSDGSTADYATVFIRVTDVNDNSPVFGTPNTTIVIMENTPAGTNVT
SVSATDVDEGFNGFVVYSLKGGEGKMDIDSSGLIFLQKVLDREEQGFYNLTVIASDQGQP
VRSTALDLTIVVDDENDNPPVFSSSRYHVKVPEDQELGSALLALSATDQDAGVNALVTYR
ITDQQPQTLSPVFLVNSSTGQLSLSQQLDYETTKEFEVKVQASDGGQTTMSNETLVVVSV
EDVNDNPPEFSQVAYDVSVFENHLKGSPVYTFSVADKDEVWAVDNVTNGLNSSALFHITV
LDVNDNNPEFQNQPYSFEALEGEYTLNNPSRVGHVAATDLDEGENARITYYLSAEDGDNP
YSIQQDGTILVTGSVDRESKDKYELLLLASDNGVPQRQNFTHVSIRVLDVNDNPPLFTRA
QYSASIHVAAAKEGDSVLAVSATDPDLGNNAVISYSLMNHSDDFHINNGTGEISLSNNLG
HITADTVVALTVVATDHGVPQLTSSASVILYLLVNDTSFGLTFESSSYEFSIEEGKAPGT
AVGSVRALTGSIAVQVGYSLKSHWDKFSIGDQGDIVALARLDREGGDLYSILVEAVDSLV
PPNTAVALVTVRVEDINDNPPVFSAWIQTRLSAPENEAGLDLGTFSASDLDIGDNALLSY
SLQDDFAGTFHINSSTGKLVTKKPLDREVMDSYELKIIATDAGKPPQSASLVLSIAVEDV
NDNPPVLPQKSYSVTVRENEPPRVILSAVATDADIGYNAIIHYTITGETTSFHVGELSGD
IATLQPLDYESQSQYMFILKAFNPGEPHLQDTANITVTVEDVNEEGPVFDQSSYYKILPD
NSTAGTLVADINARDEGKGYDEGIFYSISGGNSEGLFSLSSATGELRLTRDLSTQAVPLY
YSLNVTATDSGLPPLSTSVKVSVMIAPMDVSFPVFLEEAYHPAPLSEKSPTDTFVVEVRA
LYKLPVNYSITSGDEKGYFIIHPSNGIVRTSKNLKVEDFPVDFKVRATDSSNATIFNEVE
VKVEVIDENNFPPVFPSSLLEERLPEHSPATQIVQLKAQDNDTGRNGFLTYGILNGQGLK
FRINETTGILYSTAPFDYEEEPTEYQVVVYAEDDGIPEKKRGYCTVVIKITDINDWPPVF
DPVPDFSVHENVPVGFIVGKITASDRDTGDNAFVLYHLTGEGENIFEIDEIQGIIKIRNS
PDYETMNKYNLTVTAVNNKSAPFYQAASPVSVAVIDVNDNAPVFAQSSYSASINMVNPVG
APVLTVSATDRDQGQNGLIEYYILPDPTVSPFFLIEDLSEGKIITTGNLSRSGEMHLTVM
AKDKGSPPLNGTAVVTLSVFDNRPFVPRLNKSEISVSVLENTGVDYLIYNFAVVETSGKP
IDYTVVSGNERGHFRLDPESGELRTAVNLDYEEVSQYVILVQANKRVSSAAEVQRSGLFA
ENAAMLTISVQDVNEEPAFSSHSYSARLPSSVPYKHPVITVQATDPDSGDNGRLQYSLVG
GQTNEFDINENTGQIFTVSVAGKAGTFYLEVQAADQGTRRLTAQTTVSVTVDASSSSNIV
TLVLNQKISVVERKSAEVQRVLEEKLGWDVYVLNIYSKESDRNSRSSTDETQINIIAFDE
AHQEVPAEDVKRKLREQRGAIELGLQQVFSAPVSAALAEAPAAPARPELTAAIVLGVLLA
ATCIAFLAYVLLDLRRKRKCGKQDLVKKVDIMDGIDNPWADDKNGSLKSLEKPEHVNNGR
PELMSFDNLEGTRGDDAEKDEIQAPEKDNYLETVLLDYKGESEENGAPEKAAESRNVEAQ
PTARFTTEQNSFATDTNQKPALSLTPHPTLPTPEKELKGVKFSEVAVILDIEPRDDEPGD
DEPGDDESENDEFGDDVSL
NT seq
7440 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggacaaggagtagggacattcttagcattgctgcaaacccacataaagaccac
aagagctgcacagaagtcacaactatcaactgtgatataccacccagtccactggtgctc
tcaagctttttggatggatatacaggtgttatagaatggattacagatatcccacccaat
gtgcatctgaaattacaagaatatgtattccctgaacacttgaaatatgtagagctggta
actgattctcaatctagcaatgcaactgtgagaactagaagggcactggatgttgaggag
cttgagactgacgagatagagaacggacggaatgtaaaattgatagatgtaaacgacaat
gctccagaattccaacaagccaattacagtgcttcagtatcagaggttgctggaattact
tccacagttgtaaaagtggaagctgaggataaggacatttcaccagaattcagcatcctg
acttacagtctttggggcccaaactctgattacttttctataagggaaggagatggaaac
gtcatggtgaaaaaaccactggattacaacgaggtcagctttttcaatttaacagtccaa
gcaaaggaaaaatttggagaccagagtgccactgcatcactaataattaatgtggaagat
tatgatacattgaacccctatttcagtcaatccacatacaatgggaatatcagtgaaaac
caggtgggtcctctggctgttctcccagaggtcttggctcaagatggagacaaaggtata
aatgaaaaaataatttacagcatcaagctagtgaaccccccagcctataataacagcttt
tcaatcaatgatgctggagttttggaagtcaagacctcaattgacagagaaatatgtcca
aacctagtggtgggcattcaggcagctcagcaagacaagattttcaaaacagctgatgca
gtagttctggttactattggagatgaaaatgacaatagtccagtactgtcacaaccaagt
tatgatgtctcacttccagaaaatttcccaaatgggatggaagttcttcaaataacagct
tctgacaaagatgagggaggcttccagggaaccctcagtctcactccagatgacagtccc
ttccagctgagtccagctgggatcctaactgtgaggaactccacgctgctggacagggag
agagtaccctccatccacctacaggagactgctagagatcatttgccacctcaccgaaat
gtgagctctcctatcaacatagtgctgctggatgaaaatgacaacagcccagcctttaca
ggcacaccatatagacgagacattttcctcaacatgactgcaggaatggacattcttcag
gttgctgctgctgatccagatgatggtataaatggagagataagcttcatcttagctggt
ggcaatgaagatggacactttgaattggatgcatccacaggacaaatcagtttaaaaaca
gtaatcccattaggaattgaccagcgtaagaagtttgtcttgtggataacagctactgat
ggtgggaccattccaagaagttcatcagtgccagtagaaatcaatgtatttggagattcc
agaccacagtttactcagaaaacatacagtgtgtctgtggaagaagagctggatcctcct
gttgaagtagcacaagtcaagtatgaggcttcaaatccccacatacttgagtttcgagtg
ctgacggaatctgcttcatttgccatcgatgacaagggagtcatctcaacccaaaccaaa
ctggactacgaatcccataaaaattacactctcaatatttccttgtcagatggaagcact
gctgactatgccacggtgtttatcagagttacagatgtcaatgataacagccctgtgttt
ggtacacccaacaccaccattgtcatcatggagaacacgccagcggggaccaacgtcacc
agcgtgtcggccacagacgtggatgaaggcttcaacggattcgtggtttacagcctgaag
ggtggagaaggaaaaatggatattgacagttcaggattgattttcctgcaaaaggtgctg
gacagagaagaacaaggcttctataacttaactgtgattgccagtgaccaaggccaaccc
gtgcgatctacagcgctcgacctgaccattgtcgtcgatgacgagaacgacaaccccccg
gtgttctcctcgagcaggtatcatgtgaaggtccctgaagaccaggagctgggaagtgcc
ctgctggcactgtctgctacagaccaggatgctggggtcaatgctcttgtaacgtaccga
atcactgaccagcaacctcaaaccctctctccggtgttccttgtcaactccagcaccggc
cagctcagcctgagccagcagctggattatgaaaccacaaaggaatttgaagtgaaagtg
caggcatcagatggaggtcagacaacaatgagcaatgaaacactcgtagttgttagtgta
gaagatgtcaatgataacccaccggaattcagtcaggtagcttatgatgtatctgtgttt
gaaaaccatctgaaggggagtcctgtctacacattcagtgttgctgacaaggatgaggta
tgggcagtcgataatgtaacaaatgggcttaattcaagtgccttgttccacatcactgtt
ctggatgtcaatgataacaaccctgagtttcagaatcagccatacagttttgaggctctg
gaaggggaatacacattgaataatccctctagagttggacatgtggctgctactgatttg
gatgagggagagaatgcacgaattacttattacctgtcagctgaggacggggataatcca
tacagcatccagcaggatggaaccattttggtcactggctctgtagaccgagaaagtaaa
gacaagtatgagctgctcctgctggcatctgataacggagtgcctcagaggcagaacttc
acacacgtcagcatccgagtgctggatgtgaacgacaacccccctctgttcacaagggca
cagtactcagccagcatccatgtggcagcagcaaaggaaggagactctgtcctggcagtg
tctgccaccgaccccgaccttggcaacaatgctgtcatttcatacagcctcatgaaccat
tctgatgatttccatataaataatggcactggagaaatctctctcagcaataacctgggc
cacatcacagccgacacagttgttgctctgacagttgttgccactgatcacggagttcct
cagcttacctcaagtgcctctgttattctctacttgctggtaaatgacaccagctttggg
ctgacttttgagagctccagctacgagttcagcatcgaggaaggcaaagccccagggact
gcagtgggctctgtgagggctctgactggcagcatagctgtgcaggttgggtactccctg
aaatcccactgggacaagttctccatcggggaccaaggagacatcgtggccctggcccgg
ctggatagggaaggaggagacctgtacagcatccttgtggaagctgtggattctctggtg
ccacccaacacagctgttgctttggtaactgtgagagttgaagacatcaatgacaaccct
ccagttttctcagcatggatccaaactcgtttatcagctcctgagaatgaagctggtcta
gacttgggcacattttctgctagtgatctggatataggagataatgcacttctcagctac
tctctgcaagatgattttgctggaacattccatattaacagttctactggcaagctggtg
acaaaaaaacccttagacagagaagtgatggacagttatgaactgaaaataattgccact
gatgctggcaagccaccacaatctgcaagcctagttctgagcatcgctgtggaagatgtg
aatgacaacccaccagtgctcccccaaaaatcctactctgtgactgtgagggagaacgag
cctccacgtgtgattttgagtgcagtagccacagatgcagatatagggtacaatgccatc
attcattacaccataactggagagacaacttcatttcatgttggagaactttctggagat
attgcaacccttcagcctctggactatgaaagtcaatcccagtacatgtttattctgaaa
gctttcaatcctggagagccacatctccaggacacagcaaacattacagttactgtggaa
gatgtcaatgaagaaggacccgtgtttgaccagtcctcatattacaagatcctcccagac
aattctacagctggcacactggtagcagacatcaatgcaagagatgaaggcaagggttat
gatgaaggcattttctacagtatttcaggtggaaactcagaaggcctctttagtctttcc
agtgccacaggagagctcaggttaacaagagacttatccacacaagctgttcccctgtac
tactccctgaacgtcaccgctacggattcgggtctgccgcctctttcaacctctgtaaag
gtgtcagtcatgattgctcccatggatgtgtccttcccagtgttcctggaagaagcctat
caccctgcccctctgtcagagaagagccccacagacacgtttgttgtggaggtcagagcc
ttgtacaagctccctgtgaactacagcatcacctctggagatgagaagggatatttcatt
atccatccatccaatggtattgtaagaacaagtaagaatctaaaagtggaagactttcca
gtagatttcaaggtacgagcaacagactcatctaatgctaccatatttaatgaagtggag
gtgaaggtggaagtcattgatgaaaacaatttcccaccagttttcccatcttctctactg
gaagagagattgccagagcattcccctgctactcagattgtgcagctgaaagctcaggac
aatgacacaggcagaaatggtttcctgacatatggcattctcaatggacaaggcctgaaa
ttcaggataaatgaaaccactggaatcctttattccactgccccctttgattatgaagag
gagcccacagagtatcaggttgtggtgtatgctgaagatgatgggatccctgagaagaag
aggggttactgcacagttgtgataaagatcactgacattaatgactggccacctgtgttt
gacccagtgcctgacttcagtgtccatgaaaacgtgcctgtgggattcatagttggaaaa
atcacagcatcagacagagacacaggagacaatgcctttgttctgtatcaccttacaggt
gagggagagaatatatttgaaatagatgaaatacagggcatcattaagataaggaactct
ccagactatgaaaccatgaacaaatacaaccttacagtgactgcagtcaacaataaatct
gcccctttctatcaggcagccagccctgtcagtgttgcagtgattgatgtgaatgacaat
gccccagtgtttgcccagagctcctattctgcttccataaacatggtgaaccccgtgggc
gctcctgtcctcaccgtgagcgccaccgaccgcgaccaggggcaaaatggcctcattgag
tattacatcctcccggatcccaccgtgagccccttcttcctgatagaggatttgagtgag
gggaagataattacaactggaaacctgtctaggtctggagagatgcatttgacagtgatg
gcaaaggacaaaggttctcctcctttaaatggcactgctgtggttactctgagtgtgttt
gacaaccgcccgttcgttcctcgcctcaacaaaagtgagatcagcgtttctgttttggaa
aacactggagtggattatttaatttataattttgctgtggttgaaacttcaggaaaaccg
attgattacactgttgtatctggcaatgaaagaggtcactttagactggatcctgaaagt
ggtgagctgagaacagcagttaatttggactatgaggaagtttcccagtatgtgatttta
gttcaagcaaacaaaagagtctcctccgctgcagaagtccagcgttcagggctgtttgct
gagaacgcggccatgctgacgatctccgtgcaggacgtgaacgaagagcccgcgttctcc
agccactcctactctgcccgccttcccagctctgtgccctacaaacaccctgtcatcaca
gtccaggccacagatccagactcaggagacaatggacgtctgcagtacagcttagtggga
ggtcaaaccaacgaatttgacatcaatgaaaacacagggcagatttttacagtttctgta
gcaggaaaagctggaacattttatctggaagtgcaagctgcagaccaaggcacaagaaga
ctcacagcccagacaacagtcagtgtaactgttgatgccagttccagcagcaacattgtg
acgctggtgctgaatcagaagatcagtgttgtggaaagaaagagtgctgaagtacaaagg
gtcctggaagagaaacttggatgggatgtgtatgtgcttaatatttattccaaggagtct
gacagaaattcaaggagcagcactgatgaaacccaaataaacatcattgcttttgatgag
gcccaccaggaagtacctgcagaagatgtaaaaaggaagctgcgggagcagaggggtgcc
atcgagctggggctgcagcaggtgttctcggcacctgtcagcgcggcgctcgccgaggct
ccggcggccccggcacgcccggagctcacggctgccatcgtgctcggggtgctgctcgcc
gccacctgcatcgccttcctggcctacgtcctgctggatctgagaaggaaaagaaagtgt
gggaaacaggatttggttaagaaagttgatattatggatggcattgataacccatgggca
gatgacaaaaatggaagtctgaaaagcttagagaaaccagagcatgtgaataatgggaga
cctgaactgatgtcatttgacaacctggaaggcaccagaggagatgatgctgaaaaagac
gaaattcaggcccctgaaaaagacaattacctggagacagtgctgctggattacaagggt
gaaagtgaggaaaatggagcacctgaaaaagctgctgaaagtagaaatgtggaggcccag
cccacagcaagattcacaacagaacagaactcctttgcaacagacacaaaccagaagcca
gctctttccttaacacctcatcccacattgcctacccctgagaaagaactgaaaggagta
aaattttcagaggtggcagtgattttggacatagagcccagagatgatgagcctggagat
gatgagcctggagatgatgagtctgaaaacgatgagtttggtgatgatgtatctctctga
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integrated database retrieval system
