Pyrgilauda ruficollis (rufous-necked snowfinch): 121357041
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Entry
121357041 CDS
T07608
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03008
Ribosome biogenesis in eukaryotes
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121357041 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
121357041 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121357041 (XRN2)
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121357041 (XRN2)
03009 Ribosome biogenesis [BR:
pruf03009
]
121357041 (XRN2)
03016 Transfer RNA biogenesis [BR:
pruf03016
]
121357041 (XRN2)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121357041 (XRN2)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121357041 (XRN2)
Ribosome biogenesis [BR:
pruf03009
]
Eukaryotic type
Pre-60S particles
RNases
121357041 (XRN2)
Transfer RNA biogenesis [BR:
pruf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121357041 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
121357041
NCBI-ProteinID:
XP_041329910
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKVKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQMGHEVKDCQGLPREKQGKHDQFADTMPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHDRQNSTTSASPNTSL
TPDNSPSLGGGIKRKPEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEAVDIPPELCHGIQG
KLTLNDNAVLPDQVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRDRGMPGMYPNAVPLG
AYGSPYARPLMGSQQQIPKLLPNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRMVPSP
NQFQPAQYQGLGPMGYPQRPEDRMDRGRQAYGPGRPFPLPPPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtcgaggagaaggtcaaagagtgcaatggtgtcaaggtccccattgacacaagcaag
cccaaccccaacgaggtggagttcgacaacctctacctggacatgaacggcatcattcac
ccctgcacacacccagaggacaagccagcgcccaaaaatgaagatgagatgatggtggcg
atttttgagtacatcgacaggatcttcaacattgtgagaccaaggagactcctttacatg
gccatagatggagtggccccacgtgccaaaatgaatcaacagcggtccagaagattcaga
gcctcaaaggagggcatggaagctgctgaggagaagcaaaaaatccgacaagaaattctg
gccaaaggtggctttctgcctccagaggaggtgaaggagaggtttgacagcaactgtatc
accccgggaactgagtttatggacaatcttgctaaatgcctccgctattacatcgctgac
cgcttgaacagcgacccgggctggaagaacctgacagttattttgtcagatgccagtgct
cctggtgaaggggagcataaaatcatggattacatcagaagacaaagagctcaacccaac
catgacccaaacactcaccactgtctgtgtggggctgatgctgatctgatcatgcttggc
ttagctacacatgaaccaaacttcaccatcattagggaagagttcaaaccaaacaaaccc
aggccatgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggtctgccc
agagagaaacaaggaaagcacgatcagtttgccgacaccatgccggtctcagagcaagag
ttcatcttcatccggctgtgtgtcctgcgagagtacttggagagagagctcaccatggcc
agcttacctttcacttttgactttgaaaggagtgttgatgactgggtcttcatgtgcttc
tttgtggggaatgacttccttcctcatctgccatctctggagatcagggagggagcaatc
gatcgcttggttaacatctataaaaacgtggtgcacaaaaccgggggctacctgactgaa
agtggttttgtgaacctgcaacgggtccagatgatcatgctggctgttggggaagttgaa
gacagtattttcaaaaagaggaaagatgatgatgataactttaaaagacgacaaaaagaa
aaaaggaagagattgaagagggatcagccttcctttattcctggtggtcagttttcccct
caagccctgggaaatcgatccagccctcaggcaatctgtaaccctcgacaagctgccttt
gagatgaggatgcacgacaggcagaactcgacaacttcagcatctccaaacaccagcctg
actcctgacaacagcccgtccctgggaggaggaattaagcggaaacctgaggacagtgac
agtgaacctgagccagaggataatatcaggttgtgggaaactggttggaagcagcgctac
tataaaaacaaattcgatgtggacgcctcagatgagaaattccgccgcaaggttgtgcag
tcctacgtggaagggctttgctgggttctcagatattattatcagggctgtgcatcctgg
aactggtattaccctttccactacgctccctttgcctcggacttcgagggcattgcagac
atgccttcagactttgagaagggctccaaaccgttcaagcctcttgagcagctgatgggg
gtgttcccggccgccagtggaaacttcctgccgccaacgtggaggaaactcatgacagac
ccagaatcaagcatcattgacttctaccctgaagattttgctattgatttgaatgggaag
aagtatgcttggcaaggtgtggcgttgttgccctttgtggatgagcgacgcctcagagct
gccctggaggaagtgtaccctgacctcactcctgaagagagcaggaggaacagcctcggc
ggtgatgttctctttgtcgggaagcaccatccactctgtgacttcattgtggagcagtac
aagaccaagaacacagaggcagtggacatcccaccggagctgtgccacggcatccaggga
aagctcaccctgaacgacaacgccgtcctcccggatcaggtggtgcagtctccggttccc
atgctgcgggatctgacacagaactctgcagtcagcatctcattcaaagatccacaattt
gctgaagactttgttttcaaggctacagtgttacctggggcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaccaacaatgatggcaggccctggagaccacagctt
ggctttaacagggacaggaaaccagtgcatttggaccagtcagcgttcagaaccttgggg
cacacgatgccgagggacaggggcatgccagggatgtaccccaacgctgtgccgctcgga
gcctacggcagcccctacgccaggcccctcatgggcagccagcagcagatccccaaactg
ctgccaaatcttcggccccaggagtcctggagaggtcccacgcccttgttccagcagaca
ccgcaaagaaccgccggagctgctcctctcctcgcctggaaccgcatggtgccgtcccca
aaccagttccagccagctcagtaccagggcctagggcccatgggatacccacagagaccc
gaggaccgcatggacaggggcagacaggcgtacggccccgggaggcccttcccgctccca
cctcctgcaggaaggtacagctggaattag
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