Pyrgilauda ruficollis (rufous-necked snowfinch): 121357143
Help
Entry
121357143 CDS
T07608
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121357143 (CHD1)
03036 Chromosome and associated proteins [BR:
pruf03036
]
121357143 (CHD1)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121357143 (CHD1)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121357143 (CHD1)
SLIK complex
121357143 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
CHDCT2
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
121357143
NCBI-ProteinID:
XP_041330127
LinkDB
All DBs
Position
Unknown
AA seq
1809 aa
AA seq
DB search
MNGHSDEESVGNSSGESSRSGDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSVSESGT
QSESESDTSREKKQIQSKPPKVDGSEFWKSSPSILAVQRSGVLKKQQQQKASSSDSVSEE
DSSSSEDSADDSSSDTKKKTHKDEDWQMSGSGSMSGTGSDSESEEDREKSSCEESESDYE
PKNKVKSRKPPTRIKPKSGKKSAGPKKRQLDSSEDDEEEEEDDDDDYDKRGSRRQATVNI
SYKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEAD
GDPNTGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETK
RWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
CSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLE
LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS
TLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDK
SFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEDFEEEHGKGRECGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSA
LQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEAL
QHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPF
NKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFK
VANFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQI
SFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKK
FGGPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSN
LLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARK
EAQRLAGAGNSKRRKTRTKKNKVLKAAKLKEEIKSDSSQPSEKSDEDDDDENNKDETVSV
KHLHKKFKAEKENEEKPEPDTGIKKEAEEKRETKENKRDFKREKKEKEDKKELKEKDIKE
KRENKVKESTQKEKEVKEEKVNEIKSENKEKPKKIPLLDTPVHITASSEPVPISEESEEL
DQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPE
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISGHVNAPVIRNPDV
ERLKENTNHDDSSRDSYSSDRHPSQYHDHHKDRHQGDAYKKNDSRKRPYSAFSNGKDHRD
WDHYKQDSRYYSDSKHRKLDDYRSRDHRSSLEGSLKDGRVHLDHRSHSDHRIHSDHRSSS
EYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTP
EHTWSSRKT
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagcgatgaagaaagtgtaggaaacagtagtggagagtcaagccgatca
ggtgatgattctgggtcagcatcagcctctggatctggttcaagctctggaagtagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctgtttcagagtcaggcact
cagtcagaatcagagtctgacacatctagagagaagaaacaaattcaatctaaaccacca
aaagttgatggatctgagttttggaagtctagtccaagtatacttgccgtgcaaagatca
ggagtactcaagaagcagcaacaacaaaaggcatcctcatcagacagtgtttcagaagag
gactcctcaagtagtgaagattcagcagatgactcatccagtgataccaagaagaaaaca
cataaagatgaagattggcaaatgtcaggatcagggtcaatgtcaggaacaggttcagat
tctgaatcggaggaagacagagagaaaagcagctgtgaagagagtgaatctgactatgaa
ccaaaaaacaaggtcaaaagccggaaacctccaaccagaattaagccaaaaagtgggaaa
aagagtgcaggaccaaaaaagaggcaacttgattcttcagaggatgatgaggaggaggag
gaggatgatgatgatgattatgataagaggggatctcgtcgccaggcgacagtcaacatt
agttacaaagaagccgaagaaaccaagacagattctgatgatttgctagaagtttgtgga
gaagacgttccacaacctgaagaagatgaatttgaaactatagagaaatttatggatagt
cgagttggccgtaaaggagccacaggtgctgcaaccacaatatatgcagttgaggcagat
ggtgacccaaatactgggtttgaaaaatcaaaggagccaggagaaatacagtatcttatt
aaatggaaaggttggtcacacatccataatacatgggaaactgaggaaacactgaagcaa
caaaatgttaaaggaatgaagaaactggacaattacaagaaaaaggatcaggaaacaaaa
cgatggctgaaaaatgcttccccagaagatgtggaatattacaactgccagcaggagctt
acagatgatctacataaacaataccagatagtggaaagaataattgctcattcaaatcag
aaatcagctgctggttatccagactactattgtaagtggcagggtctgccttattctgaa
tgtagctgggaagatggagctctcattgccaaaaagtttcaggcacgcattgatgaatac
ttcagcagaaatcaatccaagaccactccctttaaagattgcaaggttctaaaacaaagg
ccacggtttgttgcactaaaaaaacaaccatcttacattggaggacacgaaagcttagag
ttaagagattatcagttaaatgggttgaattggcttgctcactcatggtgcaaggggaat
agctgtattcttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctg
aactatctgtttcacgagcatcaattgtatgggccttttttgttggttgtgccactttct
accttgacgtcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtt
tacttaggagacataactagtagaaatatgataagaactcatgaatggatgcatccacag
accaaacgattgaaatttaacatactgttaacaacatatgaaattttgctaaaggataag
tcgttccttggtggtctgaattgggcattcataggagttgatgaagctcatcgtttaaaa
aatgatgactctcttctgtacaaaactttaatagacttcaagtctaaccatcgtcttctt
attactggaacacctctgcaaaactccctcaaagagctttggtctttactccacttcatc
atgccagaaaagttttcttcatgggaagattttgaagaggagcatggcaaagggagagag
tgtggttatgcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaa
gatgtagaaaagtctttgcctgctaaagttgagcaaattctgaggatggaaatgagtgca
ttgcagaagcagtactacaagtggattttaaccaggaattataaagcccttagcaaaggt
tcaaaaggcagtacctcaggctttttgaacatcatgatggaactcaagaagtgttgcaac
cattgctacctcattaaaccaccagatgataatgaattctataataaacaggaggcctta
cagcatttaatacgtagcagtgggaaactaatccttcttgacaagctattgattcgtctg
cgagaacgtggcaacagagtcctgattttctcacagatggtaaggatgctggacatcctg
gcagaatatctgaaatatcgtcaatttccatttcagagacttgatggatcaataaaaggg
gaattgaggaaacaagcactggatcattttaatgcagaagggtcagaggacttctgcttt
ttactgtctaccagagctggaggattaggtatcaacttggcatctgctgatacggtggtt
atatttgattctgactggaatccacagaatgatctgcaagcacaggctagagcacataga
attggacagaagaaacaggttaatatttatcgactagtcacaaaaggatcggtagaagaa
gatattcttgaacgagctaagaaaaagatggtgttagatcatctagtaattcagagaatg
gacactacagggaaaactgtgttgcatacaggctctactccttcaagctcaacgcctttt
aataaggaggagttgtcggcaattttgaagtttggtgctgaggaactttttaaagaacct
gaaggggaagaacaggagcctcaagaaatggatatagatgaaatattgaagagggctgaa
actcgggaaaatgagccaggtcctttaactgtaggagatgaattgctttcgcagttcaag
gtggctaacttctccaatatggatgaagacgatattgagttggaaccagaaagaaattca
agaaattgggaagaaatcattccggaggtccagaggcgaagaatagaagaggaggaaaga
caaaaagaacttgaagaaatatacatgcttccaagaatgagaaactgtgcaaaacagatt
agcttcaatggcagcgaagggagacgcagtagaagtagaagatactctggatctgatagt
gactccatctcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcga
gaaaatattaaaggatttagtgatgcagagataaggcggtttatcaagagttacaagaaa
tttggtggccctctcgagagattagatgctgtagctagagatgctgagctagttgataaa
tcagagacagatctcagacgtttgggagagcttgtacataatggatgcattaaagcctta
aaggacaactcatctggacaagaaagagcaggaggtagactcgggaaggttaaaggccca
acattccgaatctcaggagtgcaagtaaatgcaaagttagtcatctctcatgaagaggag
ttggcaccattgcacaaatccattccttcagatccagaagaaagaaaaagatacgtcatc
ccatgccacactaaggctgctcattttgatatagattggggtaaagaagatgactccaat
ttgttgataggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcct
gatctcagtttgacacagaagattttgcctgatgatccagataagaaaccccaggcaaag
cagttacagacccgtgcagactacctcattaaattactgaataaagaccttgcgaggaag
gaagcacaaaggcttgctggagcaggcaactcaaagaggaggaaaacaagaactaagaag
aataaggtgctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcacaaccc
tcagaaaaatctgatgaagatgatgatgatgagaataacaaggatgagactgtttcagtg
aaacatctgcataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagat
actggtataaagaaggaagctgaagaaaaaagagagacaaaggaaaataagagggatttc
aaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatattaaagaa
aagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaag
gtaaatgaaatcaaatccgaaaataaggaaaagcctaaaaaaattccattgctggacact
ccagttcatattactgcatctagtgaaccagttcctatatcagaagaatctgaagagcta
gatcagaagacttttagtgtgtgcaaagaaagaatgagacctgtcaaggcagcattgaaa
cagcttgatcgaccagagaagggcctttctgaaagagaacagctggaacatactagacag
tgtcttatcaaaattggggatcatattactgaatgtctaaaggagtacacaaatcctgaa
caaattaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaatttgat
gccagaaagctgcacaaactgtataaacatgcaatcaaaaaacgtcaagagtctcagcag
cacaacgatcagaatattagtggtcatgtgaatgcacctgtaattagaaatccagatgtg
gaaagactgaaggagaatacaaaccatgatgacagtagcagggacagctattcctctgat
agacatccgtcacaataccacgatcatcataaggacaggcatcagggagatgcttacaag
aaaaatgactccaggaaaaggccctattcagccttcagcaatggaaaagatcacagagac
tgggatcactacaaacaagacagcagatactacagtgatagtaaacataggaagttagat
gactacaggagcagagaccacaggtcaagcctggaagggagtctaaaagatggccgggtt
catttggatcaccgttcgcattcagaccacaggatacattcagatcaccgttcgtcttcc
gagtatagccatcataaatctcccagagattacaggtaccactcagactggcaaatggac
cacagagcttcaggtagtggcccaaggtcaccactagatcagaggtctccttatggttca
agatctcccctcggtcacagatctccatttgaacattcatcggatcacaaaagtacacct
gaacatacatggagtagccggaaaacataa
DBGET
integrated database retrieval system
