Pyrgilauda ruficollis (rufous-necked snowfinch): 121357939
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Entry
121357939 CDS
T07608
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04382
Cornified envelope formation
pruf04510
Focal adhesion
pruf04512
ECM-receptor interaction
pruf04518
Integrin signaling
pruf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121357939 (COL4A4)
04518 Integrin signaling
121357939 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121357939 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121357939 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121357939 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pruf04147
]
121357939 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121357939 (COL4A4)
Exosome [BR:
pruf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121357939 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121357939 (COL4A4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121357939
NCBI-ProteinID:
XP_041331632
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGPQGPIGSLGSTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSAYILHFGKGLP
GERGDPGPPGMPGPRGSRGTTGPSGYPGHPGLPGVPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGVLGRGEKGEKGLPGF
PGLQGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPPLPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVQGPPGTPGRKGQMGYPGRHGEKGDPGLSGALGSPGLPGTPG
SAGQHGEKGEKGEPGRARIKGLKGERGPTGLPGFPGQRGPDGRDGELGLPGEKGAEGDSG
VAIPGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDFGDMGNVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGVQGQKGLKGLPGYPGPNGFDGQKGHRGRPGAGIPGPEGFRGT
AGDPGDEGERGTTIDGKNGLPGPRGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGMKGLKGSPGSRGLPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGIKGERGPPGDSGCIN
LRLEKGQRGDPGLPGEHGLRGERGEKGNTGFRGTRGFPGKDGVPGLPGGQGDTGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDLGLPGNPGYPGLTGSKGCKGKRGDPTPLLGPHGQK
GPLGDPGLPGLRGFPGQKGLPGIQGQPGRPGSKGDRGYPGPPGLPGATGPQGLPGEPGEK
GKPGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGEPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETVFVRGDPGDSGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGALGQPGDQGFPGRPGPRGPTGFIGDPGEPGEVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLSEEEIQPYISRCAVC
EAPAQAVALHSQDQSIPPCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPVSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgtattttcaactcaaggaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtctgtcgctgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggacctcaaggtccgattgggtccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagttccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcatggtttggatggctgcaatggctcgagagga
gacccaggatttccaggagaaaacggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagcgtatattttacattttggaaaaggactccca
ggagagagaggtgatcctggaccccctggcatgcctggacctagggggtcaagaggtaca
acaggcccatctggatacccaggccatccaggcttgcctggtgttccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtggatggacaaaagggggagccgggt
gacattggactgcctgggccacctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggtgtacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcagggtcatcctggttcttacggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccaccacttcctataaaa
ggtccacgaggagatcctggatttccgggtcctgttggtgaaatggggtcagttggacca
attggcccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcagggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccgggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcagattggccttccaggaagaaaaggggcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtactccaggaaggaaaggacaaatgggataccctggaagacacggagaa
aagggcgacccaggcttatccggtgcactgggatcaccaggactccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaagggtgagccaggaagagctagaataaaa
ggattaaaaggtgaaagaggacctactggacttccaggatttccaggccaaagaggtcca
gatggcagagatggggaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagcaattccgggtgataaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctggttctccaggagccagaggtagccctgga
gactttggtgatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaacccaggtcccccgggttttaaaggtgtccaa
ggacaaaagggtttaaaaggactccctgggtatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggaaggccaggagcaggaatccctgggccagaaggcttccgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggaactacaattgatggcaaaaacggcctt
ccaggtccacgtggcacagatggccagaaaggtcttccaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctggctgggccccct
ggaatgaaaggtctgaaaggctctccaggctcacgaggtctcccaggtcctccaggctca
cgaggtcccccaggacttccaggaaataaaggacctattggcttcccaggagaaacagga
agcaaaggcattcaaggaccccagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggagaagaaggaaaaatgggtctacctgggcctagcggagaa
tgtggagatatgggaataaaaggtgaaagggggcctccaggagacagcggctgcattaac
ctccgtcttgagaagggacaaaggggggacccaggccttcctggggagcatggactgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccaggaaag
gatggtgttccaggactaccaggtggccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatcttggcttaccaggaaaccctggatatccaggactgactggctcc
aaaggatgtaaaggcaagagaggtgacccaactcctctgcttggtccacacggtcagaaa
ggacctctgggagatccaggattgccaggacttcgtggatttccagggcagaagggttta
ccaggtatccaaggacagcctggaagaccaggctccaagggtgatcgtggatatccaggg
ccacctggattaccaggagctacaggtcctcaaggattgccaggagaacctggagaaaaa
gggaaacctggaattctgggacctccaggattgcaaggattacctggatcccaaggcaga
aaaggtcttcctgggctgcctggattggatggcttggatggactaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccgggcccccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcctcccctggtcctccaggtgatcaaggattacctggttta
gatggcatcagaggtgatcctgggaatcctggtcctcctggagagactgtctttgtgcga
ggagatccaggtgacagtggcattcgaggggcaccaggtaatcctgggccacgaggacag
cagggagccagaggccctccagggagccagggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggacaaccaggagaccaaggttttcca
ggaaggcctggtcctagaggtcccacaggtttcataggtgaccctggtgaaccaggggaa
gtggatgattcgtgccctacaatcccagggcctcctggggaagcagggcaaagaggagag
gatggctctgcaggactaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcttatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaaggaagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtgtcccaggacaaccaggtccccaaattagatctgcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacttggaaggacaagagaaagcccataatcaagatcttggtctg
gcaggatcctgcctgcctgtgtttagcaccatgccgtttgcctactgcaacatcaaccag
gtgtgttactatgccagccgcaacgacaagtcctactggctgtccagcgccgcgccgctg
cccacggcgccgctgtccgaggaggagatccagccctacatcagcaggtgcgccgtgtgc
gaggcccccgcgcaggccgtggccctgcacagccaggaccagtccattcccccctgccca
cccaactggaggagcctttggataggatactcgtttttgatgcacactggatctggtgac
cagggtggtggacagtcccttatgtcacccggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagc
ttctggctgaccaccgtgatgcctgagctgcagtttgcatcagcccccgtgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtaggtgccaggtatgcctgaagcat
ggctag
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