Pyrgilauda ruficollis (rufous-necked snowfinch): 121358121
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Entry
121358121 CDS
T07608
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121358121
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121358121
Spliceosome [BR:
pruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121358121
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
R3H
OB_NTP_bind
Helicase_C
DEAD
AAA_19
Ank_2
AAA_22
nSTAND3
HA2_N
ATPase
PhoH
AAA_23
Ank_4
ResIII
UvrD-helicase
AAA_16
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
121358121
NCBI-ProteinID:
XP_041331979
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRHRRVPRRQPGGAAGGSIAAAAVRARAEALWEVGVDEEVEMAVQLALERFRSGDEAEM
EFPSSFTSSERAFVHQLCQSLGLVSKSKGKGANRYLTVRKKDVSEGHAVMTCDLALRTKH
AVRSLIQSFPVTNKERTELLPRTERGHACAVESENKEVNKTSGRLNDGIPQVPVKRGESE
FDSFRQSLPVLEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVFC
TQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLIISSAALDANLFIRYFGSCPV
IHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKNTLAEWCSAQENTNKLT
SRRQKSVPRANEEYKWLDEGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDIDAF
AQVLNLILTENVSVDYRHSETGATALMISSGRGFLSHVEQLISMGASIHCKSSNGWMAVD
WARRFGQTEVVDLLESYGASFGFGNLDESSLVQKSGSDLSTEDRELLTAYHHSFDDEKVD
LDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHSSV
QTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSRVTMLKM
GWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLAP
INCPVVDFLMKAPDPPPAVTVRNGVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTNS
ENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIAPANGQAA
AIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSSFRGGGV
SNDSSDSGMEDKTTANLALLKLDEWLHLKLDPEASGMLLQLRQKWHSLFLRRMRAPSKPW
SQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTET
ELSDSSNAEKVSVKSTSPALHQPKKYKEKDILLSKRASDDRSAQSSVKPADSSSYSSPCA
SPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAFWE
SSVVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtcccgcggcggcagcccggcggagccgccgggggctcaatt
gccgccgccgcggtgcgtgcccgggccgaggccctctgggaggtcggcgtggacgaggag
gtggaaatggcggtgcagctcgccctggagcggttccgaagcggggacgaggcggagatg
gaatttccttctagtttcactagtagtgaaagagcatttgttcaccagctctgtcagtct
cttggattggtatctaaaagcaaaggaaaaggagccaatcgatacctgactgtaaggaag
aaggatgtatcagagggacatgcagtcatgacttgtgacttggctctccgtacgaagcac
gctgttcggagtctaattcagagctttcctgtcacaaataaggaacgcacagagctcctg
ccaaggacagagagaggacatgcctgtgctgttgaatctgaaaacaaagaagtaaacaag
acaagtggtcgacttaatgatggtatcccccaggtcccagtgaaaagaggggaatcagag
tttgattccttcaggcagtcactaccagttcttgaaaaacaggaagaaattgtccaaata
ataaaggacaataaaattgttttgattataggagagactggatcaggaaaaactacacaa
atccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttttgt
actcagccgagacgtttagcggctgttgctgtggctgaaagagtggcagcagaaagaaga
gagaagattggccagacaattggttaccagatccggttagaaagcagggtttctccgaag
acactggtgacattctgcactaatgacatgctccttcgcacactgatggcaggagacagc
accctttccaccgtgacccatgttattgtggatgaagtacatgagagggataggtttagt
gacttcttgctaataaaactgagagatgtgctgcaaaaccagaataatctaaaactaatt
atttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgcccagta
atacatatccaagggagaccttttgaagttaaagagatgtttctggaggacattttacga
agcactgggtatacaaacaaagagatggtgaagtataaaaaagagaagcagcaagaagag
aaacagaagaacactcttgctgagtggtgttcagctcaagaaaacactaacaaactgaca
tctcggagacaaaaatcggttccaagagcaaatgaggagtacaaatggttggatgagggt
ggtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgaaccatggata
gtaaaagaaatggattcctgtctttctgacatctggttgcataaagatattgatgcgttt
gctcaggtgttaaatctcattttaactgaaaatgtcagtgttgattataggcacagtgaa
actggtgcaactgctctgatgatttcttcagggagaggctttttgagtcatgtagaacag
ttgatcagtatgggagcaagtatccactgcaaatcatctaatggctggatggctgtggac
tgggctaggcgctttggacagacagaggttgttgatctgttggaatcctacggtgcttca
tttggatttggaaatctggatgaaagttccctggtccaaaaaagtggtagtgaccttagt
acagaggacagagaactactgacagcttatcatcacagttttgatgatgaaaaagtggat
ctggatctgataatgcacttacttcacagcatctgtcatagttgtgatgcaggagcaatt
ttaatatttcttcctgggtatgacgagatagtgagcctgagggaccgcattctgtttgat
gacaagagatttgctgataatgctcacagataccaagttttcatgcttcattcaagtgtg
cagactttggatcagaagaaagtgcttgaaactccaccttctggcattcgcaaaattatt
ctttctactaatattgcagaaaccagcataacagtcaatgatgttgtgtttgtcattgat
tcaggcaaggttaaagagaagtctttcgatgcactgagtcgtgttacaatgctaaaaatg
gggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcagcct
ggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaatttcagtct
ccagaacttctaagaatgccgcttcaggagatttgtttgtacacaaaacttctggctcca
attaattgtccagttgtagactttcttatgaaagctcctgatcctccgcctgctgtaact
gtgagaaatggcgtgcatatgcttaagaccatagatgccatggacccttgggaagattta
actgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatggtg
ttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgtgctcttgcc
tgccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccatgctgtgc
aggaagcgttttgctgccgggacgttcagtgaccacatggccctgctcagggctttccag
gcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttcctg
tcccaagccacaatggaaatcattgtaggaatgaggacacaattgcttggccagcttaga
gcctcaggttttgtgagagccagaggaggagctgatattagagatgttaatacgaactct
gagaactgggctgtaattaaagctgccttagtggccgggatgtatcccaatcttgtgcat
gtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcatcct
acctctgttcttggtcagtctcagtataaaaagattgccccagcaaatggacaagctgca
gccatccaggccctccctacagactggcttatatatgatgaaatgacgagagctcacaag
acagcaaacatcaggtgctgctctgttgtgacacctgtcaccgtgtccctcttctgtgga
ccagccagactgccaagtaatgccttgcaggcatcttcatcctttcgagggggaggggta
tctaatgatagcagtgacagtgggatggaggacaaaacaactgctaatctggcactgctg
aagctggatgaatggctccatctcaaactggaccctgaagcttctggtatgctgttgcaa
ctcagacagaaatggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccatgg
tctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaacag
tctgcaggtctgcagcagccttcaggaatcggccagagaccaagacctgtaacttgtgaa
gaacttcctttggcatccacatggaagtcaaccaacagcagaaaaagctcaacagaaact
gaattgtctgactcctctaatgctgaaaaggtttcagtgaaatctacatctcctgcactc
caccagccaaagaagtacaaagaaaaagacattttgctctccaaacgggcctcagatgac
agatcagctcagtcctcagtgaagcctgcagacagcagtagctattccagcccctgtgct
agtccttcttctccagtgtctggaaagggttgcaaatctccttcaccaagacaaaatatg
ccagttcggtactttataatgaaaagtagcaacttgcaaaacattgatatttctcaacag
aagggaatatggtccactacaccaagtaatgaacggaaactgaatggagccttttgggag
agcagcgtggtttacttaatattttctgttcaagggtctggatgctttcagggttttgct
agaatgggttcagcaattggatgtgagaaaagtcaagactggggatctgctggttttgga
ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat
ttgctcaacccatggaatgacagtaagaaagtgcagataagtagagatggccaggagctg
gaaccacaagttggagagcaattgctgcagctttgggaccgtattccattggcaggaaaa
aaactgactgagcatgccaagtaa
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integrated database retrieval system
