Pyrgilauda ruficollis (rufous-necked snowfinch): 121358731
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Entry
121358731 CDS
T07608
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04120
Ubiquitin mediated proteolysis
pruf04137
Mitophagy - animal
pruf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121358731 (PRKN)
04120 Ubiquitin mediated proteolysis
121358731 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121358731 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pruf04131
]
121358731 (PRKN)
04121 Ubiquitin system [BR:
pruf04121
]
121358731 (PRKN)
03029 Mitochondrial biogenesis [BR:
pruf03029
]
121358731 (PRKN)
Enzymes [BR:
pruf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121358731 (PRKN)
Membrane trafficking [BR:
pruf04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121358731 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
121358731 (PRKN)
Xenophagy
Other xenophagy associated proteins
121358731 (PRKN)
Ubiquitin system [BR:
pruf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121358731 (PRKN)
Mitochondrial biogenesis [BR:
pruf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121358731 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
121358731
NCBI-ProteinID:
XP_041333099
LinkDB
All DBs
Position
Unknown
AA seq
463 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVGSDSSILQLKEAVAQRQGVPADQLRVIFAGRELSNDLTLQNCD
LAQQSIVHIVQNPQICQNKERTEDSCVGGVLKTLKREPESLTRIDLSTSILPSVSAGLAV
ILDPGKNNVSLPAEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCSVCKQGTLTLARGPSC
WDDVLIPNRIGGVCQSQGCDGNVAEFYFKCGAHPTADSETSVALNLVTTNSRCITCITCT
DIRSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIHDPQLGYSLPCVAGCPDSLIKELH
HFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGLRRILCEPGNGIGCGT
VFCRECKEEFHEGECNSVLSPPGAMAQKGYVVDEHAAMQARWEEASRETIKKTTKPCPNC
NIPVEKNGGCMHMKCPRPQCRFEWCWNCGLEWNRTCMGDHWFE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtcaggttcaactccagccatggcttccctgtggaggttggttcagat
tccagcatcctccagctgaaggaggcagttgcccagcgacagggagttccagctgaccag
ctgcgggtgatttttgcagggagggagctgagcaatgacttgacactgcagaactgtgac
ctggcccagcagagcattgttcatattgttcagaatccacagatctgtcagaacaaggag
aggacagaagatagctgtgttggaggtgttctgaaaaccttgaaaagagaacctgagagt
ttaactcgcatagatctcagtaccagcatcctcccatcagtctctgcagggctggcagtt
attctggatcctggaaaaaacaatgtttcccttcccgctgaaaaatcaggtgcagcaagt
tacaacagtttttatgttttttgcaaaaatttctgccaagctgtgaagcctggaaaactg
agggtccgctgcagtgtatgtaaacaaggaaccctgacgttggcaaggggcccatcttgc
tgggatgatgtgctaattcccaacagaataggaggtgtttgccagtcccaagggtgcgat
ggaaacgtagcggagttttactttaaatgtggagcacacccaactgctgacagtgaaaca
tctgtggctttgaacctggttacaacaaacagccgctgtatcacatgtataacatgcaca
gatattaggagtcctgtgcttgtgttccaatgtgtgcatcgccatgtcatttgcctggac
tgcttccatttgtactgtgtgaccatgctgaatgaccgccagttcatccatgacccgcag
cttggctactccctcccctgtgtagctggttgtccagattccttgattaaagaacttcat
cacttcaggattctgggagaagaacagtacaaccgctaccagcgctatggggccgaggag
tgtgtgctgcagatgggaggagtgctgtgtccgacccccggctgtggggcaggtctgctc
cctgagccagggctgaggagaatcctgtgtgaaccaggcaacggaataggctgtgggacc
gtgttctgccgtgaatgtaaagaagaattccatgaaggggaatgcaactctgtcctcagc
ccaccaggagccatggcccagaaggggtatgtagttgatgaacacgcagccatgcaagct
cgatgggaagaagcatctagagaaacaatcaagaagacaaccaagccatgccccaactgc
aatattccagtagaaaaaaatggtggctgcatgcacatgaagtgtcctcgccctcagtgc
agatttgagtggtgctggaactgtggcctggagtggaacagaacctgcatgggagaccac
tggtttgagtag
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integrated database retrieval system
