Pyrgilauda ruficollis (rufous-necked snowfinch): 121358937
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Entry
121358937 CDS
T07608
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121358937 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pruf04040
]
121358937 (SCN8A)
Ion channels [BR:
pruf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121358937 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
SieB
Motif
Other DBs
NCBI-GeneID:
121358937
NCBI-ProteinID:
XP_041333458
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSRGFDWEEYTNNMSNFYI
IPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDFWEN
LYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKA
MLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISKLSSKSAKERRNRRK
KRKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSIMNQSLLSIPGSPFL
SRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRGRDRRSSYSGYS
GYSQGSRSSRIFPTLRRSIKRNSTVDCNGVVSLIGGPPSSMPGGRILPEGTTEIEIRKKP
GGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPCWYKFANTFLIWECH
PYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFEHVLSVGNLVFTGIF
TAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAK
SWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINPECELPR
WHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALL
LSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKAKVREFMQAHFKQREADEVKPLDE
LYDKKVNCIANHTGADINRDIDFLKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRV
PIAVGESDFENLNTEDFSSDTDPDGSKEKLDETSSSEGSTIDIKPEVEEVPVEAPEEYLD
PDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFETFIIFMILLSSGALA
FEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTNAWCWLDFLIVAVSL
VSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLI
FWLIFSIMGVNLFAGKYHYCFNETAEHRFEIDVVNNKTDCEALMPPNSTEIRWKNVKINF
DNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYIYFVIFIIFGSFFTL
NLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNRIQGAVF
DFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINFVFVIFFTCECVLKMFAL
RHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLARIGRILRLIKGAKG
IRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKHEAGIDDMFNFETFGNSMI
CLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLI
VVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYSKLADFADALE
HPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDILRQQMEERFVAS
NPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFTSRRPAATKLENGGANREKKE
GTPSTASLPSYDSVTKPEKEKQQRAEEGRREKAKRQKDARVAKC
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgacggttttctgtctcagtgtctttgccctcattgggctccagctgttcatg
ggcaatttaaggaacaagtgtgtgatttggccaattaatgtgaacgagaccttcctggat
aatggctccaggggctttgactgggaggaatacaccaacaatatgtcaaatttttacatc
attcctggcgcccccgaccctttgctctgtggtaacagctcagatgcaggccaatgtcca
gaggggtacacgtgcatgaaggcaggacggaaccccaactacggctacacgagcttcgac
accttcagctgggctttcctggctttgtttcgccttatgactcaggacttttgggaaaac
ttgtatcaattaactttacgagcggcaggaaaaacctacatgatcttctttgtgctggtg
atctttgtgggatccttctacctggtgaatctgattttggctgtggtggccatggcctat
gaggagcagaaccaggccaccctggaggaggcagagcagaaggaggcagaattcaaggcc
atgttggaacagttgaaaaagcagcaggaggaagcacaggctgctgccatggtcacctcg
gcagggacggtgtctgaagatgctgtggaggatgatggtggggggaggatgtctcggagc
tcctcggagatttccaagctcagttccaagagtgccaaggagcgtcggaacaggaggaag
aagcggaaggacaaggagctgtcggagggagatgagaagtgtgacaatgagaaggtgttc
aagtcggaatccgaggatggcatgaggaggaaagcgttcaggctgccagataacaggctg
ggaaggaagttttccatcatgaaccagtctctcctcagcatcccgggctcccctttcctc
tcccgccacaacagcaagagcagcatcttcagctacaaggggcgcttccgcgacccgggc
tcggagaacgagttcgccgacgacgagcacagcacggtggaggagagcgagggcaggagg
gactcgctcttcatccccatccgcggccgcgaccggcgcagcagctacagcggctacagc
ggctacagccagggcagccgctcctcgcgcatcttccccacgctgcgccgcagcatcaag
aggaacagcaccgtggactgcaacggcgtcgtgtcgctcatcggagggccgccctccagc
atgcctgggggccgcatcctgcccgagggtaccactgaaatcgaaatcaggaagaagcct
ggtgggtctctcttggtctcaatggatcaggtgaacgcgtcctatggaaggaaggatcgc
accaacagtgtcatgactgggttgaccaacacccttgttgaggagctggaagagtcccag
aggaagtgtcccccttgctggtacaaatttgccaataccttcctgatctgggaatgccac
ccctactggatgaagctgaaggagattgtgaacttaattgtcatggatccttttgttgac
ttggccatcaccatctgcatcgtgctgaacacgttgttcatggccatggagcaccacccc
atgacccccgagttcgagcacgtgctctctgtaggaaatctggttttcactgggattttc
acagcagaaatgttcctgaagctcattgcaatggatccatactattattttcaagaaggc
tggaacatctttgatgggtttattgtctccctgagtttaatggagctgagtctggcagat
gtggagggactttccgtgctgcgatctttccgattgctgagagtcttcaaactggccaag
tcctggcccactctgaacatgctgataaaaatcattggtaactcagtgggtgccttgggg
aatttgaccttggtgctggccatcatcgtgttcatcttcgccgtggtgggaatgcagctc
tttggcaagagctacaaggagtgtgtctgcaagatcaatccggagtgtgagctaccccgc
tggcacatgcacgatttcttccactccttccttattgtcttccgtgtgttgtgtggggag
tggattgagaccatgtgggattgtatggaagtggcaggacaggccatgtgcttgattgtc
ttcatgatggtcatggtcatcggaaatttagtggtgctgaacctgttcttggccttgctg
ctgagctccttcagcgcagacaacctggcggccacggacgacgacggggagatgaacaac
ctgcagatctcggtgatccgcatcaagaagggcattgcctggaccaaggccaaggtcagg
gagttcatgcaggcccacttcaagcagagagaggccgacgaggtgaaacccttggacgag
ctgtacgacaagaaggtgaactgcatcgccaaccacaccggggccgacatcaaccgcgac
atcgatttcctcaagaacggcaacggcaccaccagcggcatcgggagcagcgtggagaaa
tacatcatcgacgaggaccacatgtccttcatcaacaaccccaacctcaccgtgcgcgtg
cccatcgccgtcggggagtccgacttcgagaacctcaacacggaggatttcagcagcgac
acggatcctgatggcagcaaagagaaactcgacgagaccagctcctctgagggcagcacc
atcgatataaagcctgaggtggaggaggtgcccgtggaggcaccggaggagtacctggac
cccgacgcctgtttcactgaaggctgtatgcagcgctgcaagtgttgtcaggtcaatatt
gaggaggggctgggaaagtcgtggtggaccttgaggaaaacttgtttcctaattgtggag
cacaattggtttgagactttcatcatctttatgatcctcctgagcagtggggctctggct
tttgaggatatttacattgagcagaggaagaccatcaggaccatcctggagtacgcggac
aaggtcttcacctacattttcatcctggagatgctgctgaagtggtgtgcctatggattt
gtcaagttcttcaccaacgcctggtgctggctggatttcctcatcgtggctgtctcttta
gtcagccttatagctaatgccctgggctactcggaactaggtgccataaaatcccttagg
acactaagagccttgaggcctttaagagcgttgtcccgatttgaggggatgagggtggtt
gtcaatgccttggttggcgctatcccttccattatgaatgtcttgttggtctgccttatc
ttctggctgattttcagcattatgggggttaacctgtttgccgggaaatatcattactgc
tttaatgaaacagctgagcatcgctttgagatagatgttgttaacaacaagacggactgc
gaggctctgatgccacccaactccacggagatccggtggaagaatgtgaaaattaacttt
gacaacgttggggcaggatatctggctctgctgcaagttgctacattcaagggctggatg
gacatcatgtatgcagctgtagattccagaaagcaagaagagcagcccaagtacgaggac
aacatctacatgtacatttattttgttatcttcatcatctttggctcctttttcaccctg
aacttgttcattggtgtcatcatcgacaacttcaatcagcaaaagaaaaagtttggaggt
caagatattttcatgacagaagaacaaaagaagtactacaacgccatgaaaaaactgggc
tcaaagaagcctcaaaaacccattccccgacctctgaaccgcatccaaggagccgtcttc
gacttcgtcacgcagcaagccttcgacatcgtcatcatgatgctcatctgcctcaacatg
gtgaccatgatggtggagacagacactcagagcaagcagatggaggacatcctctactgg
atcaactttgtgtttgtcatctttttcacctgtgagtgcgtgctgaagatgtttgccttg
aggcactactatttcaccatcgggtggaacatctttgacttcgtggttgtgattctgtcc
atcgtggggatgttcctggctgaaatcatcgagaagtacttcgtgtcgcccaccctgttc
cgagtcatccgcctggctcgcatcggccgcatcctgcgcttgatcaagggagccaagggg
atccgcacgctgctctttgccttaatgatgtccctgcctgccttgttcaacatcggcctc
ctgctcttcctcgtcatgttcatctactccatcttcggcatgtccaacttcgcctacgtc
aagcacgaggccggcatagacgacatgttcaacttcgagacctttggcaacagcatgatc
tgcttgttccagatcaccacgtcggccggctgggacgggctcctgctgcccatcctgaac
cggcccccagactgcgacctggacaaggagcacccgggcagcggcttcaagggggattgc
ggcaacccctcggtggggatatttttcttcgtcagctacatcatcatctccttcctgatc
gtggtcaacatgtacatcgccatcatcctggagaacttcagcgtggcgacggaggagagc
gcggacccgctcagcgaggacgacttcgagaccttctacgagatctgggagaagttcgac
cccgacgccacgcagttcatcgagtacagcaagctggcggacttcgccgacgccctggag
catcccctgcgcgtgccgaagcccaacaccatcgaactcatcgccatggacctgcctatg
gtaagtggggacaggatccactgtttggacatcctgtttgccttcaccaaacgcgtcctg
ggggacagcggggagctggatatcctgagacagcagatggaggagaggtttgtggcttcc
aacccttccaaagtgtcttacgagcccatcaccaccacgctgcggcgcaagcaggaggag
gtgtcggcggtggtgatccagagggcgtacagggctcgtttggcacgacggggcttcacc
agccgaaggcctgccgccaccaaactggaaaacgggggagccaacagggagaaaaaggag
ggcaccccctccacggcgtccctgccctcctacgacagcgtcaccaaacccgagaaggag
aaacagcagcgggcggaggagggcaggagggaaaaggcaaagagacaaaaagacgccagg
gtggccaagtgttga
DBGET
integrated database retrieval system
