Pyrgilauda ruficollis (rufous-necked snowfinch): 121359406
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Entry
121359406 CDS
T07608
Symbol
USHBP1
Name
(RefSeq) Usher syndrome type-1C protein-binding protein 1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pruf03037
]
121359406 (USHBP1)
Cilium and associated proteins [BR:
pruf03037
]
Primary cilia and associated proteins
USH complex and associated proteins
121359406 (USHBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
ATG16
TrAA12
Motif
Other DBs
NCBI-GeneID:
121359406
NCBI-ProteinID:
XP_041334269
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MERDPRCETGREREPGGTGREREPQSGTGTCWEPGGGTGTSRSPRVEPGRVGTLRVELGR
AGSPSLELGRAGSSSLELGRAGSHGEDDPGMEEESPLGATRCVPGAERGTGTPREEEEEE
EEEEEDDEDVAGDTEDIPLLAGAAPRQQRRQQRSASEDEDGWEATPSVATVAAASADARS
PDLFERLQHAVSSLERAVFSRHRQPPPRPPPAPGWHRALQSLQELSRTPGWARRWWPEVA
AGPGLPVEVAAAAARNASLRAALDQRDEELGTATAALRALRGERERLQGKVRDLREALAR
LEELGGSGSDTPGVGGTSGTGDISGNGDTPGTGDTPGVGDTPGTGDTPGPSSPPGHRPRA
PLSPQPSAGPGREQEERLQQLQGVLARLQEANRELLAALGECKDEAERLSLELGRREARC
SGLRLALRCSERCGGAYAALLDLVRAKVAPEGGTRGAALPAPSPGTGAEPSPGREPGPGP
ATPEPSPGRAPGPGPATPEPPGPAEPDSREDSADSPRGMEEGALRERIRRLRAEQAAVEG
SLLDAPEPSEPPRERDPRGRAERALREARALLPGWRRPDKEELLQELAVLKEALAELRTR
LQLAQKEKRALELLLTAHGPREAALRLLLRERERERHRDREPERDGRDGASGSSGSSSGS
SSEEEARMGRGAAMAPGNPPDPRRTREELLRIRARTEQLRGRARELALALERGSAASRAQ
QGHSASVTLELLQAHSSLALAYRGARRKQAEQLRRLRARAAALRGQHGRRERALARTLRE
LQRGGETCI
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggaccctcggtgtgaaactgggagagaacgggaacctgggggaaccgggaga
gaacgggaaccccagagtgggactgggacctgctgggagcctgggggtggaaccgggaca
tcccggagcccccgtgtggaaccgggacgtgttgggaccctcagagtggagctgggccgt
gctgggagccccagtttggaactgggacgtgctgggagctccagtttggaactgggacgt
gctgggagccacggggaggacgatcccggcatggaggaggagagcccgttaggtgccacc
cgctgtgtccccggtgctgaacggggcacgggcaccccccgggaggaggaggaggaggaa
gaagaggaggaggaggatgacgaggacgtggctggtgacaccgaggacatcccgctgctg
gcaggggcggccccgcgacagcagcggcgacagcagcgctccgccagtgaggatgaggac
ggctgggaggccaccccctctgtcgccactgtcgccgctgccagcgcggacgcgcgcagc
ccggatctcttcgagcgcctgcagcacgccgtgagctccctggagcgcgccgtgttctcc
cgccaccggcagcccccgccgcggccgccgcccgccccgggctggcacagagcgctgcag
agcttgcaggagctgagccggacaccgggctgggcgcgccgctggtggccggaggtggcg
gcgggccccgggctcccggtggaggtggcggcggcggcggcgaggaacgccagcctgcgg
gcagcgctggaccagcgggacgaggagctgggcacggccacggccgcgctgcgggcgctg
cggggcgagcgggaacgcctgcagggcaaggtgcgggacctgcgggaggctctggccagg
ctggaggagctgggggggtctggcagtgacacccccggggtcggtggcacctctgggact
ggcgacatctccgggaacggtgacacccccgggaccggtgacactcccggggtcggggac
actcccgggaccggtgacactcccgggcccagcagcccccctgggcaccggccccgcgcc
ccgctgtccccccagccctcggcgggacccggccgggagcaggaggagcggctgcagcag
ctgcagggggtgctggcgcggctgcaggaggcgaaccgggagctgctggcggcgctgggc
gagtgcaaggacgaggcggagcggctgagcctggagctgggccggagagaggcgcgctgc
agcgggctgaggctggcactgcgctgcagcgagcgctgcgggggggcctacgccgccctc
ctggacctggtgcgggcaaaggtggcaccggagggtggcacccgtggggcggcactgccc
gcgccgagccccggaaccggggcggaaccgagcccgggccgtgaaccgggacccggcccc
gccacaccggaaccgagcccgggccgcgcaccgggacctggccccgccacaccggagccc
ccggggccagcggagccggacagccgtgaggactccgcggacagcccccgggggatggag
gagggagcgctgcgggaacgcatccggcggctccgcgccgagcaggcggcggtggagggg
tcgctgctggacgcccccgagccctcggagcccccccgggagcgcgacccccgaggccgg
gcggagcgggcgctgcgggaagcgcgggcgctgctgcccggctggaggcggccggacaag
gaggagctgctacaggagctggcggtgctcaaggaggcgctggcggagctgcggacgcgg
ctgcagctggcgcagaaggagaagcgagcgctggagctgctgctgaccgcgcacggaccc
cgcgaggccgcgctgcgcctcctgctgcgggaacgggagcgggagcggcaccgggaccgg
gaaccggaacgggacgggcgggacggagcctccggcagctccggcagcagctccggcagc
agctccgaggaggaggcgcggatgggccggggggcggcgatggctccggggaaccccccg
gacccccggagaacgagggaggagctgctgcggatccgggccaggacggagcagctgcgc
ggccgcgcccgggagctggcgctggccctggagcggggcagcgctgccagccgtgcccag
cagggacacagcgccagcgtcaccctggagctgctccaggcgcacagctcgctggctctg
gcgtaccgcggggcgcggcgcaagcaggcggagcagctgcggcggctgcgggcgcgggcg
gcggcgctgcggggccagcacggccgcagggagcgagccctggcccggacactgcgggag
ctgcagcgcggaggagagacctgcatctag
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