Pyrgilauda ruficollis (rufous-necked snowfinch): 121359713
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Entry
121359713 CDS
T07608
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03015
mRNA surveillance pathway
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121359713 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
121359713 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121359713 (PABPC1L)
03041 Spliceosome [BR:
pruf03041
]
121359713 (PABPC1L)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121359713 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
121359713 (PABPC1L)
Spliceosome [BR:
pruf03041
]
Complex C
Other components
Complex C specific factors
121359713 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
ATP-grasp_2
RRM_RdRP1_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
121359713
NCBI-ProteinID:
XP_041334786
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
TFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEVGARAIEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSSGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRVLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQTPPGYFLPPMPQPQTRAAF
YGPSPVVPVRPATRWSAQPSRPPSVYPEATPILRAAVPPRRLLSNVSTMRQASTQVPRVP
PQAQRVGECEKDTHDIKLGQCCGGRGAYFNIGTQTVSTRVSSSSALPRGAQQYKYSSSAR
NMQPMGHMPPVVAPQVGEPAVRVQGQEPLTASLLAAAPPQEQKQMIGERLYPLIHVMHPS
LAGKITGMLLEIDNSELLLLLESPESLRSKIEEAVTVLQAHQSTETPKGSAGAFLP
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccagtggccctggctatcccttagcctctctctatgtgggagacctgcaccca
gatgtgactgaagccatgctctacgagaagttctcccctgctgggcccatcatgtccatc
cgagtctgccgggacgtggccacgcgccgctcgctgggctatgcctacatcaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaacttcgaggtgatcaaaggccgg
cccatccgcatcatgtggtcccaacgggaccccggcctcaggaaatcaggggttggaaac
gtcttcatcaagaacctggatgactccattgataacaaagccctgtatgacacattttct
acctttggaaacatcctgtcatgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggctttgtccactttgagacgcatgaggcagcaactcgggccattgagaccatgaatggg
atgctgctcaatgacaggaaggtgtttgttggacacttcaaatcccgcaaagagcgtgag
gcagaggttggggctagggcaatagaattcaccaatgtctacatcaaaaactttggggat
gacatggatgatgacagactgcgggaaatattctccaagtttggaaagaccttgagtgtc
aaggtcatgatggacagcagtggccgctcaaagggctttggatttgtcaactttgagaag
catgaagaagcccagaaggccgtggctgacatgaacgggaaggagatcaacgggcgggtg
ctgtacgtgggccgcgcccagaagcggctggagcgccagagcgagctcaagaggaaattt
gagcagatgaagcaagagcgggtgaacaggtaccagggggtcaacctgtacgtgaagaac
ttggatgatgggatagatgacgagaggctgaggaaggagttctctccctatggcaccatc
accagtgccaaggtgatgacggagggtggccgcagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggcaaccaaggccgtgacagaaatgaacgggcgcattgtcagcaca
aagcctctctacgtggcactggctcagaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattggccaccatgagggccctgcctggccctctcctgggctctttc
cagacccccccagggtacttcctaccccccatgcctcagccacaaaccagagctgccttc
tacggccccagccctgttgtcccagtccgccctgccactcgctggagtgcgcagccctcc
cggcctccctcagtgtaccctgaagccacccccatcctgagggcggccgtgccgccccgg
cgcctgctgtccaacgtcagcaccatgagacaggcctccacccaggtgccccgtgtgccc
ccccaggcccagagagtgggtgagtgcgagaaggacacccatgatatcaagctgggacag
tgctgtggtggcaggggtgcttacttcaacatcgggacacagacagtcagcacccgggtg
tcctcctcgtctgccctgccacggggtgcccagcagtacaagtactcctcatctgccagg
aacatgcagcccatggggcacatgccacccgtggtggccccacaggtgggagaacctgct
gtgcgtgtccaggggcaggagccactgacagcatccttgcttgcagcagccccccctcag
gagcagaagcaaatgattggtgaacgcctctaccctctgatccacgtgatgcacccctca
ctggctggcaagatcactgggatgctgctggagattgataactccgagctgctgctgctc
ctggagtccccagagtccctgcgctccaagatcgaggaagcagtcactgttctccaggca
caccagagcaccgagacacccaagggcagcgctggggccttcctgccctga
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