Pyrgilauda ruficollis (rufous-necked snowfinch): 121359806
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Entry
121359806 CDS
T07608
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04510
Focal adhesion
pruf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121359806 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121359806 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121359806 (TNR)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121359806 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Ig_DSCAM-DSCAML_C
EGF_Tenascin
Pur_ac_phosph_N
Fn3_Dep-1_2nd
FN3_Tor_3rd
EGF_2
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
121359806
NCBI-ProteinID:
XP_041334967
LinkDB
All DBs
Position
Unknown
AA seq
1356 aa
AA seq
DB search
MGTDGENPILRSVVISFNLLLLGAVLKPFECRLEMTTEPAERTAVDEAAGLANCSPPIKE
QPMVFHHIYNINIPLDSCCSSVFKSSAEEVSSEDDRLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQDNAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPGGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
RGLCVDGECVCEEGFTGEDCSQLRCPRDCSGRGRCENGTCVCQEGFAGRDCAAPRCPGAC
SGRGVCRDGLCVCEGGYDGQDCSAVSPPENLRVTGISDSSIELAWDSPGAATEYVVSYQP
AVPGGTQLQQRVPGDWSSITITDLEPGVAYNVSIYAVISDAFSIPVTSKVMTNLATPQGL
KFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSALRGANESRPAFAQFTTEIDAPKNLR
VGSRSPASLELAWDNSEAEAQSYRVVYSTLAGEHYHELLVPRHAGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRITFT
PASGMASEVTVSRDESQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPISQLH
FSQLTSSSVNVTWSDPSPPADRLILTYSPRDEEEEAQQVTLDGTRRHTSLTGLQPSTEYL
VSLVAVHGTISSEPVVGSITTGIDAPKDLRVGNVTQESMMVYWSAPIAAFDHYRISYRAA
EGRTDSMTISRDATEYILQDLQPATKYEIEVKSVRGREESELASITAYTAMDVPLGVTAT
NITPTEALLQWNPPLSEVESYVLILTRRAVAGETILVDGDSQEYQLTNLLPSTTYTVSMY
ATSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYVMTYRSTDGSR
KELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAMRSGLISTTFTTGGRVFANPQDCAQHL
MNGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFG
NLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDSRSLYKLRIGDYNG
TSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggcgaaaaccccatcctgaggagtgtggtcatcagcttcaacttgctc
ctgctgggcgctgtcctcaagccttttgagtgccgtctggagatgacgacagagccggcc
gagaggacagcggtggatgaggcagctggcctcgccaactgcagcccacctatcaaagag
cagcccatggtcttccaccacatctacaacatcaacatcccgctggacagctgctgctca
tccgtgttcaagtcttcggccgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gacaatgcagccacagggcagctggattacatcccgcagtgcagcggccacgggaatttc
agcctggagtcgtgcagctgcgtgtgcatggagggctgggcaggcagcaactgctcggag
ccgcgctgcccggggggctgctccagccgcggcgtgtgcctggagggccagtgcatctgc
gacaacgactacgggggcgaggactgctcccagctgcgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggcttcaccggggaggactgc
tcccagctgcgctgcccccgcgactgctcgggccggggccgctgcgagaacggcacctgc
gtgtgccaggagggcttcgccggccgcgactgcgccgcgccgcgctgccccggagcctgc
agcggccgcggcgtctgccgagacgggctctgcgtctgcgagggaggctatgacgggcag
gactgctcggcagtgtctcctcctgagaacctgcgggtgacagggatcagcgacagctcc
atcgagctggcgtgggacagccccggggcagccaccgagtacgtggtgtcctaccagccc
gccgtgccagggggcacccagctccagcagagggtgcctggggactggagcagcatcacc
atcacggatctggagccgggtgttgcctacaatgtcagcatctatgcggtcatcagtgac
gccttcagcatccccgttacctccaaggtgatgactaacctcgccacaccacaggggctg
aagttcaagaccatcacagagacaacggcagaggtgcagtgggagcccttctccttcccc
ttcgacggctgggagatcagcttcatccccaagaacaacgagggtggtgtgatcgcccag
ctccccagcactgtcaccaccttcaaccagacagggctgaagccaggggaggagtacact
gtcaccgtggtggccctgaaggaacaagccagaagccctcccacctccgacagcgtctca
accctcattgacggcccgacgcagatcctggtgcgggacgtctccgacacggtggccttc
gtggagtggaccccgccgcgcgccaaggtggacgccatcctgctgaagtacgggctggcg
gacggggagggcggcaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcgccgtcagcgccctccggggtgccaac
gagagccggccagcctttgcccagttcaccacagagatcgacgctcccaagaacctgcgg
gtgggctcgcggagccccgccagcctcgagcttgcctgggacaacagcgaggccgaggca
cagagctacagggtggtctacagcaccctggccggggagcactaccacgagctcctggtg
ccgcgccacgccggtcccaccacccgggccaccctcgcagatctggtgccgggaacggag
tatggcatcgggatttcagccgtgatggacagccagcagagtgtgccagcgaccatgaat
gccaggactgagcttgacagcccccgggacctgctggtgacagcctccactgagacatcc
atctcactggcttggaccaaagccacgggtcccatcgaccactaccgcatcaccttcacc
cctgcctcgggaatggcctctgaagtgacagtgtccagggatgagtcacagctcaccctc
tcggagctggagcccgggacagagtacaccatctctatcattgctgagaggggacggcag
cagagcctggaggccaccgtggatgccttcacaggtgttcggcccatctcacagctgcac
ttctcccagctgacatcctccagtgtgaatgtcacatggagtgacccatccccaccagca
gaccgcctcatcctcacctacagcccccgggatgaggaggaggaggcacagcaggtcaca
ctggatggcacccgcaggcacaccagcctgacgggcttgcagccctccaccgagtacctg
gtgtcactggtggccgtgcacggcaccatcagctctgagcccgtcgtgggctccatcaca
acagggattgatgcaccaaaggacctcagggtgggcaatgtcacccaggagtccatgatg
gtctactggagtgctcccatcgctgcctttgaccactacaggatatcctaccgtgctgcc
gaaggaaggacggacagcatgaccatctccagggatgccaccgagtacatcctccaggac
ctgcagcctgccaccaagtatgagatcgaggtgaagagcgtgcggggccgggaggagagc
gagctggcctccatcactgcgtacacagccatggatgtccccctgggggtcacggccacc
aacatcactcccaccgaggcgctgctgcagtggaacccaccgctgtcggaggtggaaagc
tacgtcctcatccttacccgccgtgcagttgcgggagaaacaattctcgtggatggagac
agccaggagtaccagctgaccaacctgctgcccagtaccacctacacagtgtctatgtat
gccaccagcgggcctctcaccagccagaccatcagcaccaacttcaccactcttttggat
cccccaaccaatctgacagccagcgaagtcacccgacggagcgccctgctgtcctgggtt
cctcccgtgggagagatcgagaactacgtcatgacctacaggtccaccgatggcagccgg
aaggagctgattgtggatgctgaggacacgtggatccgtctggaggggctttctgagacc
acggagtacacggtgcacctgcaagctgcccagaacgccatgcggagcggcctcatctca
accaccttcaccacaggaggacgtgtgtttgctaaccctcaggactgtgcccagcacctg
atgaacggagacacgctgagcggggtctacaccatctccatcaacggggacctcagccag
agggtgcccgtgtactgcgacatgaccactgatggaggtggctggattgtcttccagcgg
cggcagaacgggctgaccgatttcttccggaaatgggcagattaccgggttggctttgga
aacttggaggatgagttttggctgggcttggacaacatccacaagatcacatcccaaggg
cgctacgagctgcgaatagacatgagggatggtcaggaggcagcgtacgcctactatgac
aagttctccattggtgactcccggagcctctacaaactgcggattggggactacaatggc
acttcaggagactccctcacctatcaccagggacgccccttctccaccaaggacagggac
aacgacgttgctgtgaccaactgtgccatgtcctacaaaggggcctggtggtacaagaac
tgccaccgcaccaacctcaacggcaagtacggagagtcccggcacagtcaggggattaac
tggtaccattggaaaggccacgagttctccatcccctttgtggaaatgaagatgcgacct
tacaaccaccgtaacatctctgggaggaagagacggtccctacagctctga
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