Pyrgilauda ruficollis (rufous-necked snowfinch): 121359969
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Entry
121359969 CDS
T07608
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121359969
NCBI-ProteinID:
XP_041335334
LinkDB
All DBs
Position
Unknown
AA seq
1597 aa
AA seq
DB search
MVGRCRVPHLLVLLTLVLSGDRTEAQRAGCKSVHYDLVFLLDASSSVGKEDFEKVRQWVS
NLVETFEIGPDKTRVGVVRYSDRPSTEFDLGKYKTREEIKEAARQIQYYGGNTNTGDALR
YITTYSFSKEAGGRLSDRTVKKVAILLTDGRSQDFVLDPATAAHQAGIRIFAVGVGEALK
EELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTSGSTDD
IPGFDLMDSFSVRQIFGMKEDGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTTFKFR
KASRKEDWYIWQIIDKYGIPQVSIRLDGENKAVEYNAVGLTRDAVRVVFRNARVSDLFDR
SWHKIALSIQSKAVSLYIDCKLVQVLPIEDRENIDIQGKTVIGKRLYDSVPIDFDLQRMV
IYCDSRHAELETCCDIPSGPCQVTVLTEAPPLEVRPTVGSEQVGHLKIFNCSCPPGQKGE
RGPLGFEGPKGQKGERGIPGLPGLRGEKGESGKAYGIGVKGEKGSLGSPGPPGRDGAKGD
TGEPGQPGAYGLPGPAGPKGSEGKQGPPGIKGYVGAPGLQGERGEKGTRGDKGDRGLDGF
PGKPGVEGKQGPPGSPGPPGASGTKGDKVTTGEPGLPGLPGTSVHAEGLKGEEGKPGPRG
PQGHPGLPGPPGEPGLEGKPGVPGLPGQRGKKGEPGFPGINGLIGPQGPPGPPGTAGPPG
PPGPPGLPGEIGVSGKTGPPGPAGLPGKDGLSGLPGLPGQKGERGEKGEEGFPGKAGPKG
EPGSRGQPGEQGEAGFPGPRGLPGLRGEKGDRGEKGKDGLPAMKGERGEKGDTGSPGPPG
VPGTTAFFTPHPRIPGEPGPKGDKGDRGMTGEPGLPGVPGEQGVPGPAGVQGAKGEKGAR
GEAGAPGETGLSGPAGPPGPRGLPGNVGVPGSPGFPGKAGEKGEKGDPGKEGKVGLPGPP
GEPGRAGEPGLPGKGKDGERGERGPPGLPGPFGHKGERGAPGLPGQPGDRGVPGVGLAGP
PGPAGPPGDKGSLGPRGVPGIPGPQGPPGQDGVPGNPGERGPPGKPGSPPLLTPEDINLL
VKDVCSECPPGPPGLPGIPGFKGDKGLRGPPGRDGQDGKMGIAGPRGPPGPPGLDGPKGA
KGDRGMTGEVGEKGEQGHPGMPGFSGAPGNPGPPGSDGAPGPIGPAGNPGDTGKDGPPGP
QGPPGLPGLPGIAGNDGKDGKPGSLGEPGKPGEQGLPGREGARGLPGFKGQRGDTGPPGP
RGEPGVTGPAGREGPPGKDGDPGPIGPQGPRGLRGQPGKNGVPGSAGEPGPAGIPGPKGN
KGETGSPGLPGFIGPRGPPGEPGEKGPPGKEGTPGKQGAIGSKGERGEPGIKGEKGLQGE
KGPPGDPGIPGHKGHPGLMGPHGPPGDNGQVGPPGPPGQPGFPGPRGEPPSLETLRRLIQ
EELSKQLDAKLPYILAHIQPAQVKASHGRPGPPGPPGKEGLPGRTGPPGEPGRPGQTGSE
GPPGPIGPKGERGAKGEKGDTGIGQRGEMGPPGIPGLPGEPGYAKDGMPGPPGPQGEAGV
PGLAGPQGPPGASGQCDPSQCAYYASLAARPSNVKGP
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaagatgccgtgtgccccatctcttggttcttctcacgttggtgctcagcggg
gacagaaccgaggcacaaagagcaggttgcaagagtgttcactatgaccttgtcttcctc
ttggatgcctcctccagcgtcggaaaagaagattttgagaaagttcgtcagtgggtgtct
aatttggtggaaacctttgagattggcccagacaaaacccgcgtcggggtggtgcgatac
agcgatcgtccgagcacagagttcgacctgggaaagtacaaaacccgtgaggagatcaaa
gaggctgcacgacagatccagtattatgggggtaacacgaacactggagatgctctcagg
tacatcaccacctacagtttttccaaagaagccggtgggagacttagtgatcgaactgtt
aaaaaagtggctatccttttgactgatggaaggagccaggattttgtcttggatccagcc
actgcagcccatcaggctgggattaggatttttgctgtgggtgttggagaagccttaaaa
gaggaacttgatgagattgcttcagagcccaagtctgctcacgtgtttcatgtctctgat
tacaacgccatcgataaaattcgcgggaagctgaggaggcgcctctgtgagaatgtgctg
tgtccaaatgtccacgtggaaggagaccggttcaaacacaccagtgggagcaccgatgac
atcccaggatttgacctgatggattcattcagtgtgaggcagatttttggaatgaaagaa
gatgggattcagagcgcttatgtacggcttggaagctttcctgttgttcagaaaactgag
gatgtatttccacaaggcctgcctgatgaatatgcctttgtcactaccttcaaattccgg
aaggcttccaggaaggaagactggtatatctggcagattattgacaagtacggcatacca
caggtgtcgatccggctggacggggagaacaaggctgtggagtacaacgccgtggggctc
accagggacgctgtcagggtggttttccgaaacgcgcgggtcagcgacctgttcgaccgc
agctggcacaaaatcgccctcagcatccagtccaaggctgtctcgctgtacatagactgc
aagctggtgcaggtgctgcccattgaggacagggaaaacattgacattcaaggaaagact
gtgattggcaaacgcttgtatgacagtgtccccattgattttgatcttcagaggatggtg
atttactgtgactcccggcacgccgagctggagacctgctgcgacattccctctggacca
tgccaggtcacggtcctgacggaagcacctcccctggaagtgaggcccactgttggcagt
gagcaagttggacatctcaagattttcaactgctcctgtcctcctggacaaaagggggag
aggggtccacttggctttgaaggtcccaaaggtcaaaagggagaaagaggcatcccaggg
cttcctggactccgaggagagaaaggagagtcaggcaaagcctatggcataggagtaaaa
ggagaaaagggttccctgggctcacctggcccccctgggagggatggagcaaaaggagat
accggtgaaccaggacagccaggagcatatgggctgcctgggccagcaggtccaaaggga
tccgagggaaaacagggtccgccgggcatcaaaggctacgtaggtgcaccgggtctacaa
ggagaaagaggagaaaagggaacacgaggagacaagggagacagaggcctggatggattc
cctggaaagccaggtgtggaggggaaacagggtcctcctggcagccctggccctcctggt
gctagtgggaccaaaggagacaaggtaaccacaggtgagccaggacttccaggactgcct
ggcacttcagtgcacgctgaaggcctaaaaggagaggaaggaaagcctggaccacgagga
ccgcaaggccaccctggacttcctggacctccaggagagcctggtctggaaggcaagcct
ggagtccctggtttgccaggtcaaaggggtaaaaagggagaaccaggattcccaggaatc
aatggtctgattggccctcagggacctccagggcccccaggcactgctggacccccggga
ccgcctgggccaccgggactgccaggagagattggagtttctggtaaaactggaccacct
ggaccagctgggctgcctggcaaagatggactcagtgggcttccagggcttccaggtcaa
aagggagaacgaggggaaaagggtgaggaaggctttcctggaaaagctggccctaagggt
gaaccagggagccgtggccagcctggtgagcagggtgaagcaggttttcctggtcctagg
ggcttacctggactgagaggagaaaaaggagaccggggagaaaaaggaaaagacggtctc
ccagcaatgaaaggtgaaagaggagaaaaaggtgacacaggttcccctggacccccaggc
gtacctggaacaacagccttcttcaccccacaccccaggattcctggtgaacctggacca
aaaggggacaaaggagatcgaggaatgactggagaacctggattacctggggtcccaggt
gagcaaggtgtgccaggacctgcaggagtacagggtgcaaagggggagaaaggagcccga
ggagaggctggagcccctggagagactggtttgagtggaccagcagggcccccaggtcca
aggggcttgccaggaaatgtgggtgtgcctggaagccctggattccccggaaaggcagga
gagaagggggaaaagggtgatcctggaaaagaaggaaaagtgggtttacctgggccacct
ggtgagccagggcgtgctggagagccaggtttgcctgggaagggtaaagatggagaaagg
ggggaaagaggaccaccaggcttgccaggaccctttggacataagggtgagaggggagct
cctggcctccctggacagccaggagacagaggagtgccaggagtcggcctggctggaccc
cctggccctgcaggacccccgggagacaaagggtcactgggtcctcgtggtgtgcctggg
atccctggaccacaggggcctcctggccaggatggtgtaccaggaaatccaggggaacga
ggacctcctggaaaacctggttccccacccctgctcactccagaggacataaatctcctg
gtaaaggatgtgtgcagtgagtgccctcctggcccaccaggactgccaggcatcccaggt
ttcaaaggggataaaggtctccgaggaccaccaggtagagatggccaggatgggaaaatg
gggattgctggtcccagaggtcctccaggcccacctgggctcgatggcccaaagggtgct
aagggagaccgtggcatgactggggaagtaggagaaaaaggtgaacagggccaccctgga
atgcctggcttctcaggggctcctggaaaccctggtccacctggatcagatggggcacca
ggaccaataggaccagcaggaaacccaggagacacgggcaaagatggtcccccaggtcca
cagggcccaccagggctgcctggacttccaggcattgctgggaatgatggcaaagatggc
aaaccaggatctctgggggagccgggaaaacctggagaacaagggctcccaggccgggag
ggtgccagaggattgccgggtttcaaaggacagagaggagatacaggtcccccaggtccc
cggggggagccaggtgtgacgggtcctgctggtcgtgaggggccaccagggaaggatggt
gatcctggtcccataggaccacagggccctcgaggactccgagggcagccgggcaaaaat
ggagtgcctggatctgcaggagaacctggcccagctggtatcccaggtcccaaaggaaat
aaaggagaaacaggcagcccaggactccctggctttataggaccccgaggaccacctgga
gaaccaggagagaagggtcctcctgggaaagagggcacaccagggaaacagggtgcaatt
ggctccaaaggagagaggggtgaacctggcatcaaaggtgaaaaaggccttcaaggagaa
aagggtcctccaggtgatcctgggatacctggtcataagggccatccaggactgatgggt
ccccatggacctccaggagacaatgggcaagttggacctcctggtcctccggggcagccg
ggatttccaggaccaaggggagaacccccatctctagagactttgaggagactcatccaa
gaggagttatccaagcagctagatgcaaagttaccctacatcttggctcacatacagcct
gcacaggtgaaagcatctcatggcagaccaggacctcctggtccccctgggaaggaagga
ctcccaggaagaactggccctccgggagagcctggccggcctggacagactggctctgaa
gggccacctggaccaattggtcccaaaggagaaagaggagcaaagggtgagaaaggagac
actggcattggtcaacgaggggaaatgggtcccccaggaattccaggcctcccaggggag
cctggttatgccaaagatgggatgccaggaccccctggccctcaaggtgaagctggtgtg
ccaggtctggcaggtccccaaggacccccgggagccagtggacagtgtgacccctctcag
tgcgcttactatgcaagcctggctgcccggccctccaatgtcaaagggccatag
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