Pyrgilauda ruficollis (rufous-necked snowfinch): 121360069
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Entry
121360069 CDS
T07608
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pruf03000
]
121360069 (RC3H1)
04121 Ubiquitin system [BR:
pruf04121
]
121360069 (RC3H1)
Transcription factors [BR:
pruf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121360069 (RC3H1)
Ubiquitin system [BR:
pruf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121360069 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121360069
NCBI-ProteinID:
XP_041335471
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GAVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYESALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEAGTPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPMYPPHYDGRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPEARDRYQQTEA
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
AATKSIISDYSPYETHSGWGGSPYSPHQNIPSQGRFSDRERLSMSDVAGHGKQLPSADRE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLTLTFS
SDVPNGSALTQENIGLLSNNMASLSLSEDPEGGGDGHDSQRGGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacgatccggaagcccatcagcttgggctgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacagac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagcgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtcg
ctgggtgaaagaacagtcacagagctcatcctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctctaaagctggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccgcgattccctcaggcttccaagact
agcattgggcatgttgtccagctcctttacagagcctcgtgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttacgaagctctgaga
agggaacacgattcccagatagttcaaatagctatggaagcgggtttgcgcattgcgcca
gaccagtggtcctcgctcttatatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacttgaatcgtcttagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccggggggccagctgcacctttgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagacctcttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
ggggcagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactccggttatgaaagtgctctg
aagccagggaagatggaccacctgagtagcagtgctcctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgctttgccagtgaaccctcatcctgtgcctgct
cgggtgccagcagatctgccctcggtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacaacaagcagatatgttttatcaagaccccagaggggct
gccccatcgtttgagccagcaccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccgtcagcacccgaggcgggtactccgtacctggagcac
tacgggccgtacctgccggagcgggtggtgagcccgcagtacccgcagccgcaggggtac
ccgaccctggcacagcccatgtaccccccacactatgacggccgccgcgtctaccccccc
gtgcagccctaccagcgggaggacgtggtgcggggcagcccggtgcccatcgacatcccg
caggcggctgtgcccctctatgtacctgaggccagagacagataccagcaaacagaggct
tattgcccagtggctccgcatcttggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcccagctggaagagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaatgtg
gacagtaaagccatgcgtgagcagcgactggacatgcagcgccgagcggccgagacgggc
gacgatgacctcattccatttggagaccgaccgactgtgtcaagatttggggccatctcc
cgtacttccaaagccatgtaccagaactctgggcccatgcaggccatggcagttcaggga
gctgccaccaaatccatcatttcagactacagtccttacgaaacccacagtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcagtgacagggag
aggctgtccatgtcggatgtggctggtcatgggaaacagttgccctcagctgaccgagag
cagcagctgcgcatggaactgcagcaagttgaccatcagatcagccagcagacccaaatg
agggggctggaggctgttagtaacaggctgctgttgcagagagaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagcgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaacaagctgggcaccactaaacagacagaa
aatggacaactagaaccacaaaacaaggttccagctgaggaccttacactgacattcagc
agtgatgttccgaatggatcagctttgacccaagagaacattggcctcctgtcaaacaat
atggcatctctcagcctgtcagaggaccccgagggaggaggagatggccatgactcccag
agagggggagtgacacccacatctgctccatga
DBGET
integrated database retrieval system
