Pyrgilauda ruficollis (rufous-necked snowfinch): 121360228
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Entry
121360228 CDS
T07608
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121360228 (COL25A1)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121360228 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121360228
NCBI-ProteinID:
XP_041335844
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASTLGKSRGAAGRDGNGKPGLGKPGCGGDRCPRRAGPVGSALAA
LLSALAAASCVYLGVRTSDLQARVAAIEGARGDFSAAAPLPPLPGFSLEQLNAMMQEKVE
RLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGPPGRNGYPGPIGM
DGKLGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGP
PGPPGPPGPRGPPGDTGKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGR
DGQVGEPGLPGIAGEKGEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEP
GESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDKGEAGPVGKGERG
EPGIPGPKGKTGEPGSRGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIH
EALQRIATLTVTGPPGPPGPQGLQGSKGEPGSPGAPGVDGEQGPKGSKGDTGDPGMPGEK
GGIGLPGLPGANGMKGEKGDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPG
LNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGARGIDGPVGPHGPAGPKGERGEKGTVG
DPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGEKGKKGKKGPKGEKGEQGAPG
LDAPCPLGPDGLPMPGCWQKGVTPWLIAKKR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcacgctg
gggaagagccgaggagccgcaggacgggatggcaacgggaagcccggcctcgggaagccc
ggctgcggcggggaccgctgcccgcggcgggccgggccggtcggctcggcgctggccgcg
ctcctctcggcgctggccgcggcctcctgcgtctacctgggggtgcggaccagcgacctc
caggccagggtcgcggccatcgaaggcgcccgaggggacttctctgccgccgccccgctc
ccgccgctgcccggcttttccttggagcagctgaacgctatgatgcaggagaaagtggag
cgacttctcgcccagaaatcctacgagcacttggcaaaaatacgagtagcgagagaagcg
gctccagagtgcaactgcccaccaggtcctccagggaaaagaggtaagcggggaagaaga
ggagagactggacctcctggtccaccagggcgaaatggctatccgggtccgattggtatg
gatggaaagctgggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaaggga
gatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggtttctctct
gctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacaagctggaccc
cctggacctccagggccaccaggacccagaggtcccccaggagataccggcaaagatggt
cctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaacaaggactgaca
ggacctcaggggcctccaggacaaaagggttctgtcggagtgcctggtgttccagggaga
gatggacaagtgggtgaacctggtttgcctggcatagcaggagagaagggagaagcaggg
cttaagggtgaccctggagaaagaggagaaaagggggatgctggtgagaatggactgaag
ggtgacacaggagaaaagggtgaccctggctcttctgcggctggaattaagggtgaaccc
ggtgaatctgggcggcctggacaaaagggtgaaccaggccttcctgggcttcctggactc
cctggaataaagggtgaaccaggtttcattggtccacaaggagaacctgggttgccaggg
ctaccaggaacaaagggtgacaaaggagaggcaggccctgttgggaagggtgagcgaggt
gaacctggaatccctggaccaaaggggaaaacaggtgaacctggatctagaggccccaaa
gggtcaaagggtgatacaggtgagagaggtgacacaggatctgcaggtccacggggacca
cctggacagaagggtgatcaaggtgcaacagagataattgattacaatggcaatatccat
gaagctctgcagaggattgccaccctgactgtcacgggaccaccaggaccaccaggaccc
caagggctgcaaggatcaaagggtgaaccaggatccccaggagctccaggagttgatgga
gagcagggtcctaagggctcaaagggagacacaggtgatcctggaatgcctggagaaaag
ggaggaatcggtctgcctggcctaccaggagccaatggcatgaaaggcgaaaaaggagac
gttggtttgcctggtgcccaaggtccttcaatgataggaccacctggaccaccagggcca
catggtcctccaggccccatgggacctcatggactgcctggcccaaagggtgaaccaggg
ttaaatggtcttaaaggattgaagggtgaaccaggtcaaaagggtgacagagggcccctt
ggtcttccaggagcatctggcttagacggaaagccaggagcccggggcatagatggccca
gttggtccccatggccctgcaggtcccaaaggagagagaggtgagaagggaactgtaggt
gaccctggacccagaggaccatatggcttgcctggcaaagacggcgagcctggcctcgat
ggtttccctggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagggggaa
aagggaaagaaaggcaaaaaagggcctaaaggggagaaaggagaacagggtgctcctgga
ttagatgcaccttgcccattgggtcctgatggattaccaatgcctggctgttggcaaaag
ggagtcacaccatggctcattgctaaaaagagataa
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