Pyrgilauda ruficollis (rufous-necked snowfinch): 121360486
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Entry
121360486 CDS
T07608
Name
(RefSeq) PH-interacting protein isoform X1
KO
K11797
PH-interacting protein
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pruf04121
]
121360486
Ubiquitin system [BR:
pruf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121360486
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Bromodomain
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_DCAF12
WbmS-like
Motif
Other DBs
NCBI-GeneID:
121360486
NCBI-ProteinID:
XP_041336279
LinkDB
All DBs
Position
Unknown
AA seq
1824 aa
AA seq
DB search
MSGDGGSRHTAELRAELYFLIARFLEDGPCQQAAQVLIREVAEKELLPKRTDWTGKEHPR
SYENLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHV
VWKGSALAALHCGRPPESPVNYGSPPSIVDTLFSRKLNGKYRLERLVPTAVYQHMKMHKR
ILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENT
MIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFW
LWDAGTLKINPRPTKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKI
SELEFHTDKVDSIQFSNSSSRFVSGSRDGTARIWQFKRREWKSILLDMATRPAGQSFQGV
EDKITKLKVTMVAWDRHDNSVITAVNNMTLKVWNSFTGQLIHILMGHEDEVFVLEPHPFD
PRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHL
LIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPH
PARYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDSMIQRLQQEQDQRR
SGEAGTSSTSRINRGSVSSTSEVHSPPNIGLRRSGQIEGVRQMHSNAPRSEIATERDLVA
WSRRVVVPELSSGVASRQEEWRTAKGEEEVRVYRSEEKRKHVMSHIPRENKIPAFSKNHS
HDNLLDASDSKKQAANQHNYRTRYAAEETARPAEELENGHSSSDEGEVVVASGGTSEDDE
RAWHSDGSSSDYSSDYSDWTADAGINLQPPKKVPKIKTKKAESSSEDEEGPEKQRKQIKK
ERKKGIEEKDGPSTSPKKKKPKERKQKRLAVGVLTENGLTLEEWLPSAWITDTVPRRCPF
VPQMGDEVYYFRQGHEAYVVMAKKNKIYNINPKKQPWHKMELREQELMKIVGIKYEVGLP
TLCCLKLAFLDPDTGKLTGGAFTMKYHDMPDVIDFLVLRQQFDDAKHRRWNIGDRFRSVI
DDAWWFGTIESQEPLQPDYPDSLFQCYNVCWDNGDTEKMSPWDMELIPSNAVFPEELGTS
VPLTDDERRTLLYKPLDGEWGSRTRDEECDRIIAGINQLMTLDIASAFVAPVDLQAYPMY
CTVVAYPTDLSTIKQRLESRFYRRLSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLL
LHFIKDQSCYDIIPLYNAMKKKVLSDSDEEEEKDTNVPGTSTRKRKDHQPKRRLRNRAQS
YDIQSWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNY
ESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSILSDYKSALRFHKRN
TIKKRRKKRSRSSSVSSSVASSPERKRRLIKPQLKAETSATSSSSAPARSTALRHAPPQM
NGKAAEASSLVRTRSNRGITDVAVTEQPSTSSGAKPLTIKPLITKPNTTAGSGKSVLENS
TKHSKNQNIVSNPSPSDYSHSTRNNSTKENPEKEKQIKRKVKSSTLNPQADCKNNALASG
SIQVNGHGGQPLKPPVKRGPGRKPKVETNNSSCEVVVHKKRGRKPKKLQIVEQQKVAEQN
TVQTTRDIPEEASVSTACNSLSENNVKEDLLQKKGRGGRKPKRKIKSRQPGSDLLAPANV
KMQTRSRRKKTHEPMEEGSEELKDSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSL
TFGTSSRGRVRKLTEKAKANLIGW
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggacggcggtagccggcacacggcggagctgcgagcggagctctacttcctc
atcgctcgctttttggaggacggaccatgccagcaagcggctcaggtcctgatccgagaa
gtggcggagaaagagctgctgcccaagcgcacggactggacgggcaaggagcatccccgg
agctacgagaacctggtgaaatactacagacacttggcacctgatcacttgcttcaaata
tgccatcgacttggaccgcttctagagcaagaaattccacaaagtgtccctggagtgcag
acattattaggggctggcagacagtctttgcttcgtacaaacaaaagttgcaagcatgtt
gtatggaagggatctgctcttgctgcactacattgtggaaggcctccagagtcccctgta
aattatggcagtccacctagtatagtggataccctattttcaagaaaactaaatggaaaa
tacagacttgaacgccttgttccaactgcagtctatcaacatatgaagatgcacaagcga
attttaggacacttatcttctgtctactgtgtaacttttgatcggactggcaggcggata
tttactgggtcagatgattgccttgtaaaaatctgggcaactgatgacggaaggttgttg
gctaccctgagagggcatgcagctgaaatatctgatatggcagtaaactatgaaaacacc
atgatagctgctggaagctgtgataaaatgatccgagtttggtgccttcgaacttgtgca
cccttagcagtcctgcagggccacagtgcatctataacgtcattgcagttctctccatta
tgcagtggctcaaagagatacttatcttcaaccggggcagatggaactatatgcttttgg
ctgtgggatgctggcacccttaaaataaatccgaggccaacaaagtttacagaacgtcct
cggcctggagtccaaatgatctgttcttcttttagtgctggtggaatgtttttggccact
gggagtacagatcacatcattagggtttatttctttggatcaggtcagccagagaagata
tcagagttggagtttcatactgacaaagttgacagcattcagttttctaatagtagtagc
agatttgtgagtggaagccgtgatggaacagcgcgaatctggcaatttaagcgaagggaa
tggaaaagcattttgttagatatggctactcgcccagcaggacaaagttttcaaggagtt
gaagataaaatcacaaagctgaaagtgaccatggtggcatgggatcgccatgacaattct
gttataactgcagttaataatatgactctgaaagtctggaattctttcactggccagctc
attcacattctcatgggacatgaagatgaagtgtttgtgcttgaacctcacccatttgat
ccaagagttctcttctctgctggacatgatggaaatgtcatagtttgggatttggcaaga
ggggtcaaaatccggtcttacttcaacatgattgaaggacaaggacatggtgcagttttc
gactgcaagtgctctcctgatggacagcattttgcatgtactgattctcacggtcacctt
ctgatttttggctttggttccagtagcaaatatgacaagatagcagatcagatgttcttt
catagtgattatcggccccttatccgtgatgccaacaactttgtcctggacgaacagaca
cagcaggctccacaccttatgcctcccccatttttggttgatgtggatggcaaccctcat
cctgcaaggtatcaaagactagttcctggtcgtgagaactgcagggaggaacagcttatt
cctcagatgggagtgacatcttcaggattgaatcaagttcttagtcagcaagcaaatcaa
gaaattagtccgttggatagcatgattcaaagacttcagcaagagcaggaccagagacgt
tctggggaggcaggaaccagtagtaccagccggataaacagaggatctgtaagctctacc
tcagaagtacactccccaccaaacatagggttaaggcgcagtggacaaattgaaggtgtg
cgtcagatgcacagcaatgcaccaagaagtgaaatcgccactgagcgggaccttgtggct
tggagccgcagggtggtagtgcctgaactgtcttctggtgtggccagtaggcaagaagaa
tggagaacagcaaagggagaagaagaagtaagggtgtatcgatctgaagagaaaagaaaa
catgtaatgagtcacattccaagagaaaacaaaatacctgctttctctaagaaccattct
catgataatttactagatgctagtgactcaaagaaacaagcagctaatcagcacaactac
cgtacgagatatgcagcagaagaaactgcaaggcctgctgaagagttggagaatggacac
agttcttcagatgaaggggaggtagttgttgccagtggtggaacatcagaagatgatgaa
agagcatggcacagtgatggcagttccagtgactattctagtgattattctgactggacg
gcagatgcaggaatcaatttgcaaccaccaaagaaagttcctaaaattaaaacaaagaaa
gcagaaagtagttcagaggacgaagaaggacctgaaaaacaaaggaagcaaattaaaaag
gaaaggaaaaagggtattgaggagaaagatggaccatcaacatcaccaaagaagaagaaa
cccaaagagagaaaacaaaagaggctggctgtaggagttctgacagaaaatggtttgaca
ctggaagaatggctgccttcagcatggattacagacactgttcctcggcggtgcccattt
gtcccacagatgggagatgaggtttactatttccgacaaggtcatgaagcatacgttgta
atggccaagaagaacaaaatttataatattaatcccaagaaacaaccgtggcataaaatg
gaattgcgggagcaagagctgatgaaaatagttgggattaagtatgaagtgggattgcct
actctctgctgtcttaaactagcttttcttgaccctgatacgggtaaactgactggagga
gccttcaccatgaagtaccatgatatgccagatgtcatagatttcctagttttgaggcag
cagtttgatgatgcaaagcataggcgatggaatataggtgatcgtttcaggtcagtgata
gatgatgcttggtggtttggaacaattgaaagccaggaacctcttcagcctgattatcct
gatagcttatttcagtgctacaatgtctgctgggacaatggtgatactgagaagatgagc
ccttgggacatggagctgataccaagtaatgctgtatttccagaagaactgggaactagt
gttcctttaactgacgatgaacgtagaacactgctctacaaacctttggatggagagtgg
ggttccaggacccgagatgaggagtgtgacagaattattgcagggataaatcagcttatg
actctagatattgcttctgcatttgtggcaccagtggatcttcaggcttacccaatgtat
tgcactgttgtggcatatcccacagacctcagtaccattaagcaaagactggaaagcaga
ttttacaggcgcctttcttcgttaatgtgggaagtccggtacatcgaacacaatactcgc
acatttaacgaacctggaagtcctattgtcaaatctgccaaatttgtcacagatcttctg
ctacacttcataaaagaccagagctgctatgacataattccattatacaacgcaatgaag
aagaaagtgttgtctgactctgatgaggaagaagagaaagacacaaatgtgccagggact
tccactagaaaaagaaaggaccatcagccgaagcggcggctacgtaatagggctcagtca
tatgacattcagtcatggaagaagcaatgccaggagctgctgaatctcatttttcagtgt
gaagactctgaaccatttcgacaaccagtggatcttcttgagtatccagattatagagat
attattgacactcctatggactttgctactgttagagaaacactggaagctggcaactat
gagtcaccaatggagttatgtaaagatgtgagacttattttcagcaattccaaggcctat
acaccaagtaaaagatcaaggatctacagcatgagcttgcgcctttctgctttctttgaa
gaacacataagttctattttatcagattataaatctgccctacgctttcataaaagaaat
acaataaagaaacgaaggaaaaaaaggagtagaagcagctcagtttccagtagtgttgca
tccagccctgaaaggaagaggagattaataaaacctcagctgaaggcagaaacttctgcc
acttcatcatcttctgcacctgcacggtcgacagcgctgagacacgctccacctcagatg
aacggaaaagccgctgaggcctcctcccttgtgcggactcgaagcaatagggggataaca
gatgtggctgttacagagcaaccatctacttcttcaggagcaaagcctttaactataaag
cctttaattacaaagcctaatactactgcagggtcaggaaagtcagtactggagaattca
accaaacattccaagaaccagaatattgtatcaaacccttccccgtctgattacagtcat
agcactaggaataactccacgaaagaaaatcccgagaaagagaagcaaatcaagcgcaaa
gtaaaatcttccactcttaatccacaagcagattgcaagaataatgctttggcatcagga
agcattcaggtaaatggacatggaggacagcctttgaaacctccagttaaaagaggtcct
ggacggaagcccaaggtggagactaacaacagtagctgtgaagtggtggtgcacaagaaa
agaggcaggaaaccaaaaaagctacaaattgttgaacagcaaaaggttgcagagcagaat
acagtccagaccacaagggatataccagaggaagcctctgtttctactgcatgcaattct
ctttctgaaaataatgtgaaggaagacttgttacaaaaaaaaggccgagggggtagaaag
ccaaaaaggaagataaagagccgccagccaggctcagacctcttagctcctgcaaatgtt
aaaatgcaaacaagaagcaggaggaaaaagacacacgagcctatggaggagggttctgaa
gagcttaaagattctgaacctcacatgagaactagaaaccagggtaggaggacagccttt
tacaatgaagatgactctgaggaagagcaaaggcagctattgtttgaagacacctcctta
acttttggaacttcaagcagaggcagagtccgaaagttgactgaaaaagcaaaagctaat
ttaattggttggtaa
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integrated database retrieval system
