Pyrgilauda ruficollis (rufous-necked snowfinch): 121362309
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Entry
121362309 CDS
T07608
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121362309 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121362309 (DHX38)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121362309 (DHX38)
Spliceosome [BR:
pruf03041
]
Complex C
Other components
Step II factors
121362309 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
PhoH
Microtub_bd
SRP54
AAA_16
AAA_30
DUF6449
AAA_7
Motif
Other DBs
NCBI-GeneID:
121362309
NCBI-ProteinID:
XP_041339637
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MEASEESLHRLSGTAASGEAGGLLLRTRGAEQHVFKAPAPRVSLLGLDVLAAQKRRERQE
EAAGGKRSRVASYKDWEEGHDEAGSAEEEEEDEANRSSRRARRNRHYRSVHVETPSYTGG
VSEEFLERSRQRERERREHGVFASSKEEKDRKKERNRDRDHDRKRDREERDRSHHSRSER
DGSSERSGRRGEPESPRHRPKDAATPSRSSWEEDDGGYSSAHRSQWESPSPTPSYRDSER
SHRLSSLRDTDRRERDRSVRSRYSDKTPLPTPSYKYNEWADDRRHLGATPRLSRGRGRRT
EGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKKREQHLHKQ
RQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFLD
GRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGDI
MGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEASSEFAKKKSILEQRQYLPIFAVQ
QELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVS
EEMGVRLGEEVGYAIRFEDCTSESTVIKYMTDGILLRESLREADLDNYSAIIMDEAHERS
LNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKT
PQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPI
YSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMD
ALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLL
KSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKM
LIVSCDMGCSSEILLVVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQW
KNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYF
HQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDG
EWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQERRNPLGS
ARSTKIYTPGRKEQGEALTPRRTPARFGL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgagcgaggagtccctgcaccggctgtcggggacagccgcgagcggcgaggcg
ggcgggctgctactgcggacgcggggcgccgagcagcacgtctttaaggcaccggccccg
cgcgtctccctgctgggactggacgtgctggcggcgcagaagcggcgggagcgccaggag
gaggcggccggggggaagcgatcccgtgtcgcatcctataaggactgggaagagggtcat
gacgaggcgggcagcgccgaggaagaggaagaggacgaggccaaccggagcagccgcaga
gctcgcaggaacagacattaccgctctgtgcacgtggagacgccttcctacacagggggt
gtaagcgaggagtttttggaacgcagccggcagcgggagagggagcgtcgggaacacgga
gtctttgcctcctccaaggaggagaaggaccggaagaaggaacgcaatagggatcgggac
cacgatcgaaaacgagaccgtgaggagcgggacaggagtcatcacagcagatcagagagg
gatggctcatcagagcggagtggcaggaggggtgaacctgagagccctcgacatcggccc
aaagatgcagccacaccatctcgctccagctgggaggaagatgatggtggctacagcagt
gcccatcgctcacagtgggagtctccatctcccacaccttcctacagagactcggagcgc
agccaccggctgtcatcgctgcgggacacggaccggcgcgagcgggacaggtctgtcagg
agccggtactctgataagacgccgttgccgaccccatcgtacaagtacaatgaatgggcc
gatgaccggaggcacctgggagccacgccacgcctgtcccgagggagagggcggcgcacg
gaaggggaggagggcatcgcctttgagacggaagaggagcggcagcagtgggaggatgac
cagcggcaagctgaccgggactggtacatgatggatgagggctatgatgagtttcacaac
cctttggcttactcctctgaggaatatgtgaagaagcgtgagcagcacttgcacaagcag
aggcagaaacggatctcggcacagcggcggcagatcaatgaggataatgagcgctgggag
acaaatcgcatgctgaccagtggtgtggtccatcggattgaggtggacgaagattttgag
gaggataactctgctaaagtgcatctgttggtgcacaatctagtgcctcctttcttagat
ggaaggattgtcttcactaagcagccagagccagtcatccctgtgaaggatgccacctcg
gatttggccatcatagctcggaaaggcagccagctggtgcgcaagcacagggagcaaaag
gagcgtaagagggctcagcacaagcactgggagctggcaggcaccaaactgggagacatt
atggggatcaagaaagaggaagagaaggatgagatggtcacagaagatggcaaagtggat
tacaaaacagagcagaagtttgctgaacacatgaaagaaaaaagtgaagccagcagtgag
tttgccaagaagaaatcgatcctggagcagagacaatacctacccatctttgctgtacag
caggaactgctctctatcctcagagacaacagcattgtgatcgtggtaggggagacaggg
agtgggaagacaactcagctgacacagtatctccatgaggatggctacactgattatggc
atgatcggctgcacacagccccgcagagtggctgccatgtcggtggccaagcgggtcagt
gaggagatgggggtgcgtctgggggaggaggtaggctatgccatccgctttgaggactgc
acatctgagagcacagtgatcaagtacatgacagatgggatcctgctccgtgagtcgctg
cgggaggctgacctggacaactacagtgctatcatcatggacgaggcacatgagcgctcg
ctcaacactgatgtgctgttcgggctgcttcgggaggtggttgcccgacgctcggatctg
aagcttgttgttacttcagccaccatggatgcagataagtttgcctccttctttgggaac
gttcccattttccacattcctgggcgcacttttcctgtggatattcttttcagcaagacc
ccacaggaggattatgtggaggctgcagtgaaacaagccttgcaggtccacttgtctggt
gctcctggagacatcctcgtcttcatgcctggccaggaggatatcgaggtgacctcagag
cagattgtggagcaccttgaggagctggagaaggcacccgctcttgctgtactgccaatc
tactctcagctgccctcggacttgcaggctaagatcttccagaaggctcctgatggggtc
aggaagtgcatcgttgccactaacattgcagagacctcactgacagtagatggtatcatg
tttgtgattgactctggctactgcaaattgaaggttttcaacccccgaataggcatggat
gctctgcagatctaccccatcagtcaggctaatgccaatcagagggccggccgagctggc
cggacaggcccaggccactgtttcaggctctacacccagagtgcctacaagaatgagctg
ctgacgaccacggtgcctgagatccagcgcaccaacctcgccaatgtagtgctcttgctc
aagtccctgggtgtgcaagacctgctgcagttccatttcatggatccaccccctgaagac
aatatgctgaactccatgtaccagctgtggatcctgggggccctggataacacaggtggt
ctgacctctacaggacgcctcatggtggagtttccactggaccctgcactctccaaaatg
cttattgtctcctgtgacatgggttgcagctctgagatcttgcttgtagtctccatgttg
tctgtgcctgccatcttttaccggcctaagggccgagaggaggagagtgaccaagtgcga
gagaaatttgctgttccagagagcgatcacttgacttacctgaatgtttaccttcagtgg
aaaaacaacagctattctaccctgtggtgcaatcagcacttcatccatgccaaggccatg
cggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcagcagcgaatgagc
ctggcatcctgtggtacagactgggatgttgtcaggaagtgcatctgtgctgcatatttc
catcaggctgcaaagctgaagggcattggggagtatgtgaacatccgcacaggcatgccc
tgccacctgcaccccacgagctctctgtttggcatgggctacacaccagactacattgtg
taccatgaattggttatgactaccaaggagtacatgcagtgtgtcactgctgtggatggt
gagtggctggcagagctgggccctatgttctacagtatcaaacatgctggcaagtcacgc
caggagaaccggcgccgtgccaaggaggaggtgtctgccatggaggaggaaatggctttg
gcagaggagcagctgcgtgcccgccgggaggagcaggagcgccgtaacccactgggcagt
gcaagatctactaaaatctatacccctgggcgaaaggagcagggggaggccctgacgcca
cgacgcaccccagcccgctttggtctctaa
DBGET
integrated database retrieval system
