Pyrgilauda ruficollis (rufous-necked snowfinch): 121362431
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Entry
121362431 CDS
T07608
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121362431 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121362431 (COL5A1)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121362431 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121362431
NCBI-ProteinID:
XP_041339863
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDTHTRWKRRSWIRSCSVPAALLLLLGALSLGRAAEPADLLKVLDFHNLPDGITKTTGFC
TSRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNE
QGIQQIGVELGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVALSVQKKNVTLVLD
CKKKITKFLDRSEHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAALEYCEHYSP
DCDTAIPDSPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPETPTTKPGPPEVA
AGEKPETKEDYAAPTAPPERGNPGKQPKEDGAVDDPLVDEYNYETINEEYFTPMPYEDIN
YNEEIDPQGGLTENAVEAELPTSTVVTYNETDATQGGDDLDKDFTEETIKEYDGNYYDNY
YDRTASPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPG
PPGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSA
QEAQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPG
PAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDG
ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPG
QQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPG
PQGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDG
PEGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRG
TPGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPG
PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPG
PPGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPG
PPGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVG
LPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPG
PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG
PPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAG
PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG
EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRG
IPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKG
DRGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPG
PPGPPGPPGEVIQPLPIQAAKRTRRNIDASQLLDDGNADNYMDYADGMEEIFGSLNSLKL
EIEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETC
IFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASAHQ
NITYNCYQSVAWHDATTNSYDKAIRFLGSNDEEMSYDNNPYIRAALDGCAARKGYQKTIL
EINTPKVEQVPIVDIMFNDFGEAAQKFGFEVGPACFLG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcggtggaaaaggcgcagttggatacggagctgctcggtgcccgct
gcgctgctgctgctcttgggtgccctgtccctcggccgggcagctgaacctgcagacctc
ttgaaggtgttagactttcataatttacctgatggtatcacaaaaaccacggggttttgc
acaagcagaagatcttcaaaagaagcagatgttgcttacagagtaacaaaagatgctcag
ctcagtgccccaacaaagcagctgtatcctgcttcccccttcccagaggacttctccatt
ctaaccactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgag
caagggatccagcaaattggtgtggagttgggtagatctcctgtattcctgtatgaagac
catacaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagat
ggcaagtggcaccgagtggctctgagtgtgcagaagaaaaacgtcaccttggttttggac
tgcaaaaagaaaatcaccaagttcctggaccggagcgagcatcccatcatcgacgtcaac
ggcatcatcgtgttcggcaccaggatattggatgaggaggtctttgagggtgacatccag
cagctcctgatcgtggcggacccgcgggcagccctggagtactgtgagcactacagcccc
gactgtgacaccgccatccccgactccccccagtcccaggaccccaaccaggatgaatac
tacacggacggggagggagaaggtgacacttactactacgagtacccctactacgaggac
gtggatgaagctgtcaaacctgaaacccccaccaccaaacccggccctcctgaggtggct
gctggagagaaacccgaaaccaaggaggattatgcagctcccacagcaccccctgagaga
gggaaccccgggaagcagcccaaggaggacggagcagtggatgatcccctggttgatgag
tacaactacgagaccatcaacgaggagtattttacccccatgccctatgaagatatcaac
tacaacgaggaaatcgatccccagggtggcctcactgaaaatgcagtggaagctgaactc
cccacgagcactgtcgtcacctacaatgagactgatgctactcaaggaggggatgacctg
gataaagatttcactgaggaaaccataaaggaatatgatgggaattattatgacaattat
tacgaccggacggcctctcccgacatcggccccggcatgccagccaaccaggacaccatc
tacgaagggatcggtggcccccggggtgagaaggggcagaagggggaacctgccatcatt
gagccgggaatgctggtggaaggcccccctggtcccgaaggcccagcaggccttccagga
cctccaggaccaactggacccgtgggcttgatgggtgacccaggggagaggggcccacct
ggacgcccaggtctcccaggagcagatggattgccaggaccaccagggacaatgcttatg
ctgcctttccgcttcagcggcggaggcgacgcgggctccaaaggacccatggtgtcagcc
caggaggcgcaagcccaggctatcctgcagcaggccaggctggcactgaggggaccagcg
ggacccatgggcctgacggggcggccgggacccatgggacccccaggcagtggaggactg
aagggagaagctggagaaatgggacctcagggtccacgaggcatccaaggtcctcccggt
cctgcagggaagccaggccgcaggggacgagctggcagtgacggtgcccgggggatgcca
ggccagacaggaccaaagggtgaccgaggatttgatggcttggctggtttgcctggggag
aaggggaacagaggtgagccaggcccccacggccccccaggggctcctggagaggatggg
gagaggggagatgatggagaagttggacccagaggtctccctggagaacctggaccccga
ggactgctgggccccaagggacccccaggccccccggggccaccgggtgtggctggcatg
gatggacaaacaggtcccaaagggaatgtgggacctcagggtgagccagggcccccagga
cagcaggggaacccaggggctcagggtcttccaggtccacaaggcgccatcggtccccca
ggagagaaaggcccgctgggcaaacctggtctccctggcatgcctggtgctgatgggccc
ccgggtcatcctggcaaggaaggtcctcctggagagaaggggagtcagggtcccccaggt
cctcagggccccattggttatccaggaccacgtggagtcaagggagcagatggagttcgt
ggcttgaaaggcaccaagggagaaaagggtgaagatggtttccctggcttcaaaggtgac
atgggcatcaaaggagaccggggggaaattggcccccctggcccccggggtgaggatggg
cccgaaggtcccaaaggtcgctctggccccaatggagatccaggtcctcttggccctgct
ggagagaagggaaaactcggcgtgccaggactgcctgggtacccgggcaggcagggcccc
aagggctccatcggcttcccaggattcccaggagccaacggagagaagggcacacggggc
actcctggcaaaccaggtccgaggggacagcgtggtcccacgggtccacgtggggaaaga
ggccccaggggaagcactggaaaacctggcccaaagggcaattctggtggtgatggcccc
cctggtcctcctggagaaaggggaccaccagggcctcaaggaccgactggatttcctgga
ccaaaaggcccccctggtcctcctgggaaggatggattgcctgggcaccctggacagaga
ggagaaactggtttccaaggcaagactggccctccaggcccccctggtgtcgtagggcct
cagggtccaactggtgagactggacccatgggtgagcgaggccatccaggccccccaggt
cccccaggtgaacaaggccttcctggcctcactggaaaagaaggcaccaagggggatcct
ggtcctgctggcctcccagggaaggatggtccccctggattgagagggttccctggagaa
cgaggcctccccggccccattggttctccagggctgaaaggcaacgaaggtcccccaggt
cctccaggcccagccggctcccctggggagcgtggccctgcaggatcagctggccctata
ggattgccagggagacctggccctcagggacctccaggacctgcaggtgaaaagggagct
ccaggggagaagggtccccaaggaccggctggcagggatggcatccagggccccgtggga
ctgccgggccccgcaggtcctgttggacctcctggagaggatggagacaagggtgagatc
ggggagcctgggcagaagggcagcaaaggtgacaagggggagcagggtcccccaggcccc
actggtccccaaggcccaattggtcagcctggcccagctggagctgatggagagcccggg
ccccgaggacagcaaggcctctttggtcagaaaggtgacgaaggaccccgaggtttccct
ggtccccccggccctgtgggcttgcagggcctgcctggaccacctggggaaaagggagaa
acgggtgacgttgggcagatgggtccaccaggcccaccaggacccagaggtccatctggg
ccaccaggagcagatggtccacagggtcctcctggaggaataggaaaccctggtgcagta
ggagagaagggtgaacctggggaatctggtgagcctggtctccctggagaggttggcctg
ccgggccctaaaggtgaaagaggtgaaaagggagaagcaggtccctctggtgctgctggt
ccacctggccccaaaggcccaccaggtgatgatggccccaaaggcagccctggtccagtt
ggtttccctggtgaccctggtcctcctggagagcctggcccagctggtcaagatggtccc
cctggtgacaaaggtgatgatggtgaacctggacagactggttcccctgggcccacagga
gagccaggcccctctggaccccctggaaaacggggccctcctggtccagctggtcctgaa
ggaaggcaaggagagaaaggagccaagggggaagctggcttggaaggacctcctgggaag
actggacccattggtccccaaggtgctccagggaagcccggccccgatggccttcgtggg
attcctggtccagttggtgaacaaggtctcccaggatcccctggcccagatggtcctcca
ggcccaatgggccctccgggtttgcctggtctgaaaggagactctggtcctaaaggggag
aagggtcacccaggtttaattggtcttattggaccaccaggagagcagggagaaaagggt
gacagaggcctcccagggccccagggctcagcaggacccaaaggagagcagggtatcaca
ggtccctctggacccattggacctccagggccaccaggattaccgggtccacctggtccc
aaaggtgctaaaggctcatcaggtcccacaggtccaaagggtgaatcaggtcttcctggg
cccccaggacctcctggtcctcctggagaagtcatccagcccctgcccatccaggctgcc
aagaggaccaggaggaacattgatgccagccagctgctggacgatggcaatgctgacaac
tacatggactatgctgatggcatggaggagattttcggctccctgaactccttgaaactg
gaaatcgagcagatgaagcatcccttgggcactcagcacaacccagcacgcacctgcaag
gacctgcagctctgccaccctgatttcccagatggtgaatactgggttgatcccaaccag
gggtgttccagggactctttcaaagtttactgtaatttcacggctggtggagagacctgc
atcttccctgataagaaatctgaaggagctagaattacttcctggcccaaggaaaaccca
ggctcgtggttcagtgaattcaagcgcggtaaactgctctcctacgtggactcggatggg
aaccccatcggggtggtgcagatgaccttcctgcgtctcctgagcgcctcggcccaccag
aacatcacctacaactgctaccagtcggtggcctggcacgatgccaccaccaacagctac
gacaaggccatccgcttcctgggctccaatgacgaggagatgtcctacgacaacaacccc
tacatccgagctgccctcgacggctgcgcggcaaggaagggctaccagaaaaccatcctg
gaaatcaacacgcccaaagtggagcaggtccccatagtcgacatcatgttcaatgacttc
ggagaagcggcacagaaatttggattcgaggtgggaccagcttgcttcctgggctaa
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