Pyrgilauda ruficollis (rufous-necked snowfinch): 121363340
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Entry
121363340 CDS
T07608
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121363340 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pruf04091
]
121363340 (FREM1)
Lectins [BR:
pruf04091
]
C-Type lectins
Lecticans
121363340 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Beta-prism_lec
Motif
Other DBs
NCBI-GeneID:
121363340
NCBI-ProteinID:
XP_041341497
LinkDB
All DBs
Position
Unknown
AA seq
2175 aa
AA seq
DB search
MKPFEKGWLFLLLPLVLRVVCSSFISVNLGVKVMKGQSVFLSKEDLNFSIPREKDVCKVE
VINEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILDEDMVMLRLYRFTETETFVETFT
LHVQLLEPDCNIIKMRSHALEVPEYYGLSRVIDKNVLTFDYDRKINLDCTISVISSETHL
PAHGQLITGKVQQGQFHGDQPWSFFPGTKHSLGQRCRNGSCTLGLGHIKNKKMSCEEFLR
MGIQYRHLDPPSPDTDYIPVRLDLSDSRSKTLHKTEYAWLPVHIRGAVPNQIPKAAPMAK
FILEVDQFILTPITTTTIDAEDNETPKSLLIFNITKPPPQGFITHLSDHTKPIGSFTWKD
LSDMLIAYQPPNNSHTERRNYEVEFEVHDFYFERSLPITVHLSIRTTDTNAPRVSWNTGL
NLLEGQSRPITWQHFQIVDNDDIQNVRLVTVDGLQHGRLSVRGGKGFMFTVSDIQAGVVC
YHHDDSDSTKDFVVFRIFDGSQSIRHKFPINILPKDDSPPFLISNVVIEVHEGQTILIQR
SMLHASDMDSSDDYILFNITKPSQAGEVLKKPEPNLIGYSVKSFLQKDLFNGMIYYHHLG
GEVFEDSLEFVLCDSHDPPNLSEPQVMMVHIIPVDDQLPREAAGVTRHLVVKETEISYLT
KKHLHFIDVEEQDRELTYTITTSPFFSCTHGYSDAGKLFMVDTIPKLVKDPTALALRSFT
QHAVNYMKVAYMPPLQDIGPEPQQVQFIFSVSNQHGGTLYGICFNITILPVDNQAPEVFT
THLRVREGGMSPVTEGHILISDSDTKREHLFLLLQKQPQHGVVELDNIPMNGGDRLSCED
LRTLAVRYRHDGSETLTDDVFFAATDGIHFVEFILQVKVLPVNDELPVMQTGLVPVLHCL
EGEEVVLSSEYIYATDVDSDDMELMFMLAHQPYHGVVRKAGIAVDRFSQADVIAGLVTYK
HTSGEIGLTPCIETLTLIVSDGEAGLDVKDCCYEGPPSPPVSRDDPFPVYDLNVTVLPVD
NQPPSIVTGASFVVEEGSSAALTTKHLFATDPDTTADDLEFVLVSPPQFGFIENILPSPG
FEKSNIGISIGSFQLKHLKAMNINYVQARHVQMEPTEDKFVLYVTDGLHRSAETPFFVLI
SPTNDEVPELIARNITVQEGEMKELDLSVINAVDLDVPQDPLVFGVVQRPSYGFLINGVH
GSDVLRYKELINHGLHSHGLLVHGFSMELLRNGMKLMYMHDNSENLTDSFKIQLSDGKHK
VFRTISVKVIPVNDEKPVLSKKNDIEVNIGETHVISSAVLSAEDKDTPRERIYYLFERLP
ENGQLQLKEGQGWITLLAGMKCTQEELDMNLVRYVHTGSVGSKKKDSFTFYLWDGYNRSP
AVDFYINIKGLEKEDIAVFTNLLRVPKGDRNYITTDVLLALDGSDKPEELLYVITSPPQY
GQIEYVSYPGIPITSFSQMDVARQIVCYVHKAKAVVREDTFRFIISNGLRTKHGTFKIAL
EAADQALPTLSRNMGLRLTEGAMALLTPDVLQLSDPDTAKENLTFLLAQLPQYGHLYYNG
AMLLQYNFTQQDVDNRDVAYKHQGGNSQTDRFTFVASDRTNQGFIVNGSVQSEPVTFTIQ
VDHLDKMAPKIIHLHCFSDVELLKNGNYGIYITARFLRAYDPNTEDDKIIFKILRGPHYG
YLENTTTGGFIQERFSQKDLNSKIILYVINKSREVNSDNLEFQVTDASGNSAAPQRLELR
WSQIEMLHTEYEVCENKGVMSLKITRAGYLGESAFITVKVNEISARLGKDFTVTPSKLVQ
FDPGVSTKMWNIAITYDGLEEDDEVFEVVLNSPVNAVLGTRTKAVVKILDSKGGQCNYSS
GQSKHDFWGRGTLFPASSGSSSPSRPGNVSLEGIPLLPSKGKREHGGDLWQEHSLASRST
TRLRATGNGRIVHPSSVFRNETHVIFKYHGIVSLKIEDDTSSAETNKKAQPQINVISSRK
TEIPLADKAELAAEPRSRHKDFNSFQKACTSDLKGLLHYEESTQKLFQCDGISWKFWNSQ
SKEVTMKRCPSGWTYHEGSCYFLVVNHKVTWNTAARACREQYLGSLTSVANEQHMQWLWD
FSGKMPFWIGLNDQVNPGHWEWNGGEPVTYINWRRGSYHFPVRGRNCVFVQKRGKWQATD
CKKVKPNSYICSRKL
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctttgagaaaggctggctgtttctactgctgcctctcgtgttaagagttgtg
tgctcctcctttattagtgtgaaccttggggtgaaagtgatgaaaggacagtctgtcttc
ctgtcaaaagaagacctcaacttttccatccccagagagaaagatgtctgcaaagtagaa
gtgatcaacgagccaataacacagagggttgggaaacttactccacaggtttttgactgt
cacttccttcctaatgaagtcaaatatacccacaatggatgtccgattttagatgaagac
atggtgatgcttaggctgtacaggtttacagaaacggaaacgtttgtagaaacattcacc
cttcatgtgcagttacttgagccagactgtaacatcataaaaatgcgctcccatgctttg
gaagtccctgaatactatggtctgtctagggtgattgacaagaatgtcctcacctttgat
tatgacaggaagataaacctggattgcaccatttccgtaatctcttcggaaactcacctg
cctgctcatggccagcttatcaccgggaaagtgcagcaagggcagtttcatggagatcag
ccatggagcttcttccctggcactaagcacagcttgggccaacggtgcagaaatgggagc
tgtacactgggactaggacacattaaaaacaaaaagatgagttgtgaagaatttctgagg
atgggaattcagtatcgacaccttgaccccccctcgcctgacactgattatattcctgtg
aggttggatctctcagacagcagaagcaaaactctgcacaagacggagtatgcatggctc
cctgttcacattagaggtgctgttcccaaccaaatacccaaagctgccccaatggcaaaa
ttcatcctggaagtagatcaatttattttaacccctattacaaccacaaccattgatgct
gaagacaatgaaactccaaagtctctgcttatattcaacattaccaagccacctccacaa
ggctttatcactcacctctctgaccacacaaaacctattggctccttcacgtggaaggat
ctcagtgatatgctcattgcttatcagcctccaaataacagccacacagagaggaggaat
tatgaggtggagtttgaggtgcatgacttctactttgagaggagtttaccaatcactgtg
catctttctatcagaacaacagatacaaatgcccctcgagtttcgtggaatacaggcctc
aacctcctagagggacaatcccgacccatcacatggcagcacttccaaattgtagacaat
gatgacatccagaatgttcgcttggtcacagttgatggcttacagcatgggcggctgtca
gtgagaggaggtaaaggattcatgttcaccgtctctgacattcaggccggagttgtctgc
taccatcatgatgacagtgattctaccaaggactttgtggtatttagaatttttgatggc
tcccaaagtattcgccacaagtttccaataaatattctccctaaagatgatagccctccg
tttctgatcagcaatgtggtcattgaagttcatgagggacagacaatcctgattcagcgc
tccatgcttcatgcttcggacatggattccagtgatgactacatactattcaatattacc
aagccatcacaagctggagaagtcttgaagaaaccagaaccaaacttgatagggtattct
gtcaagagttttcttcagaaggatctattcaatggaatgatttattatcatcatttggga
ggagaagtatttgaagattcccttgagtttgtgctatgtgatagccatgaccctccaaat
ctctcagagccacaggtgatgatggttcacattatccctgtggatgatcagctacccaga
gaagctgcaggagtgacccgtcacctggttgttaaggagactgagatttcttacctaacc
aagaaacatctccacttcatagatgtggaagagcaagaccgggagctcacatacaccata
acaacttccccatttttctcttgcacccatggctactcagatgctgggaagctgtttatg
gtggacaccatccccaaactggtcaaggatcctactgctcttgcactgcggtcatttact
cagcatgctgtgaactatatgaaagttgcttacatgccacccttgcaggacatcggaccc
gaacctcagcaagtccagtttattttttctgtcagtaaccagcatggaggcactttgtat
gggatctgcttcaatattacaattcttcctgtggacaatcaagccccagaggtttttaca
acccatttgagagtgcgagagggcggcatgagccctgttacagagggacacattctcatc
tctgattcagacacgaaacgagagcatctcttcctgctcctgcagaagcagccgcagcat
ggggtagtggagctggataacattcccatgaatggaggtgacaggctttcctgtgaggac
ctgcgtaccctggcagtcagatatcgtcatgacggctctgagactctcactgacgatgtt
ttctttgcagccacagatggcatccattttgtagagttcatcctgcaggtcaaggtgttg
cctgtgaatgatgagctacctgttatgcaaacaggccttgttcccgttctccactgcctg
gagggtgaagaagtagtcctctcctcggagtacatttatgccacagatgtggacagcgat
gacatggaactgatgttcatgctggcccaccagccctaccacggggtggtgaggaaagct
ggcattgccgtggatcgtttctcccaagctgatgtcattgctggtttagtcacatacaag
cacactagtggtgagattggcctgactccttgcattgagaccttaactttgattgtctct
gatggtgaggctggcctagatgtgaaagactgctgttacgagggacctccttctcctcca
gtttcacgtgatgatccatttcctgtctatgacctcaacgtcactgtacttccagtggac
aaccagcctccatcaattgtaaccggtgcaagctttgtggtggaggagggctcctcagca
gcccttactaccaaacatttgtttgccactgacccggacaccactgcagatgacttagaa
tttgtgttggtttctcctccccagtttggtttcattgaaaacatactgccttctcctggg
tttgagaagagcaacatcggaataagcataggttcatttcagctgaagcacctgaaagcc
atgaatataaactatgttcaagccagacacgtgcaaatggagccaacagaagacaaattt
gtactttatgtcactgatgggctgcatcgctcagcagagactccattttttgtgttaatc
agcccaaccaatgatgaagttccagaactcatagccaggaatattaccgttcaagaaggg
gagatgaaagagctggacctgtctgttatcaatgcagttgatctggatgtgcctcaagac
cctctggtatttggggttgtgcagagaccctcgtacgggttccttattaatggtgttcat
ggcagtgatgttctacgctataaagagttaattaaccatggtcttcacagccatgggttg
cttgttcatggcttttcaatggagctactgaggaatggaatgaagctgatgtacatgcat
gacaactctgaaaatctcactgacagctttaaaattcagctatcagatggaaaacataaa
gtcttcaggaccatttcagtaaaggtcattccagttaatgatgagaaaccagtgctgagc
aagaagaacgatatcgaggtgaacataggtgaaactcatgtaatttctagtgctgttctg
tcagcagaagataaagatacccccagggagagaatttactacttgtttgaaagacttcca
gaaaatggtcagcttcagctcaaggaaggacaagggtggattactctcctggctggaatg
aagtgcactcaggaagagctggatatgaacctggtgagatatgtccacacaggaagtgtg
gggtccaagaaaaaagacagcttcacattttacctctgggatgggtacaacagatcccca
gctgtggacttctacataaatatcaagggcttggaaaaggaagacattgctgtttttaca
aaccttcttagagtgccaaaaggagatcgcaactacattacaactgatgtcctccttgca
ttggatggatctgacaagccagaggagctcctttatgtgataacctccccaccccagtat
ggacaaatagagtatgtcagctatcctggcatccccattacgagcttcagtcaaatggat
gtagcacgacagattgtctgctacgttcacaaagccaaggcagttgttcgtgaagataca
ttcagattcatcatcagcaacggactgaggactaagcatgggacattcaagattgccttg
gaggcagctgaccaggctttgcccactctatctaggaacatggggttaagattaactgaa
ggagctatggcacttcttactcctgatgtactgcagctttcagacccagatactgcgaaa
gaaaaccttaccttccttttggctcagctcccccagtacggtcatctctattataatggg
gcaatgttactgcagtacaatttcacacagcaagatgtggacaacagggatgttgcatac
aagcaccaaggtgggaattcccaaactgacagatttacatttgttgcctcagataggact
aaccaaggcttcattgtgaatgggagcgtgcagagcgaaccagtgacattcaccattcag
gtggatcatttggacaaaatggcaccaaaaattattcatctccattgtttttctgatgtg
gaactgctgaagaatggcaattatgggatctatattactgccaggttcctgagggcatat
gaccccaatacagaagatgacaaaataatttttaagattttgcgaggtcctcattatggc
tacctggaaaatacaacaacaggtggattcattcaggaaagattcagccaaaaggattta
aacagcaaaatcatactttatgtcatcaacaaatcacgagaagtaaattcagacaacctg
gagtttcaagtgacagatgccagtggaaactctgcagcaccccaaaggctggagctacgg
tggtctcaaattgaaatgctacacactgaatatgaggtgtgtgaaaacaagggagtgatg
tctctgaaaatcaccagggcaggatacctgggggagtctgcctttataactgtgaaggtc
aatgaaatatctgctaggttgggaaaggacttcactgtgactccctccaagcttgttcag
tttgatccaggagtgtcaaccaagatgtggaatatagcaattacctatgacggattagag
gaagatgatgaagtctttgaagtagttctgaactcccctgtgaatgctgttcttggcaca
cggacaaaagctgtagtgaaaattttggactcaaaaggaggtcaatgcaactattcttct
ggccaaagcaagcatgacttctgggggagaggcacactgtttccagcttcctcgggctcc
tcatcaccttccaggcctggcaatgtttccttggaagggatcccactgcttccttccaaa
gggaagagggagcatggaggggatctgtggcaggagcacagcttggcgagtcggtcaacg
accaggctgagagcaactggaaatggcagaatagttcatccttcatctgtatttagaaat
gaaacacatgtgattttcaaatatcatgggattgtatcactcaaaatagaggatgacacc
tcctcagctgaaaccaacaagaaggcacaaccacagataaatgtaatctcctctaggaaa
acagaaatcccactggctgataaggcagaacttgcagctgaaccaagatcaagacataag
gactttaactcttttcaaaaggcttgtacatcagatttaaagggtctcttgcattatgaa
gaaagcacacagaagttatttcagtgtgatggaatatcatggaaattctggaattcccaa
agcaaggaggtaactatgaagagatgtccctctggatggacttatcatgagggcagctgc
tacttcctggtagtgaatcataaggtcacctggaacactgctgctcgggcttgcagagaa
cagtacctggggagtctaacaagtgtagctaatgaacaacacatgcagtggctgtgggac
ttcagtgggaagatgcccttttggataggtttgaatgaccaagtcaatcctggacactgg
gagtggaatggaggagagcctgtaacctacataaactggagaagaggctcctaccacttt
ccagtgagaggaagaaattgtgtatttgtgcagaagcgaggaaaatggcaagcaactgac
tgcaagaaggtcaaaccaaacagctatatatgttcaagaaagttgtaa
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integrated database retrieval system
