Pyrgilauda ruficollis (rufous-necked snowfinch): 121363696
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Entry
121363696 CDS
T07608
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03015
mRNA surveillance pathway
pruf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121363696 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121363696 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121363696 (SYMPK)
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121363696 (SYMPK)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121363696 (SYMPK)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121363696 (SYMPK)
U7-dependent histone pre-mRNA processing factors
121363696 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
121363696
NCBI-ProteinID:
XP_041342205
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MVKSKVISELQEACWEMMSSMASDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRTADSDV
PKRHENDVSLERIPRDHPVIKYNVLWEEGKAALEQLLKFMVHPAISSINLTAALGSLATI
ARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQPQITT
LLVDLGTPQAEIARSMPSPREARKRPRDEPDAALKKMKIEPPLGEDDEDKDLEAPAVAVA
KAAGAVTVPSDTDITAEFLQPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTE
AQIKHLARLMATQMTAAGLGPGVEQTKLLREEPKEEKVAKPDAVVIKRRLSALGQGQAIA
VLGAHGSAAGLPDETPQAKRRPEPIMPATQPRLAGAGGRKKVFRLSDVLKPLSEVQVEKL
KLGAVRRILRSERAVAASGAAQARVKILASLVTQFEVPLKGEVLSFILDDVRGRLDLAFA
WLFQEYNAHLARGGPGGLERYDECLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEV
IRKYCEDEVGTPGGHWGDIGGGHMEMAHKGDTARVGGEVAPGGDTWRCPGVTGRRSDARA
AQVRQQALQFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTGEGPAIPGV
RNVPGGPKCSVGIADVLCGIQNVP
NT seq
2051 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagtccaaggtgatcagcgagctgcaggaggcctgctgggagatgatgtcctcc
atggccagcgacatcatcctgctgctggactcggacaacgacggcatccgcacgcacgcc
atcaagttcgtggaggggctgatcgtgacgctgtcgccgcgcacggccgactccgacgtc
cccaagcggcacgagaacgacgtcagcctggagcgcatcccgcgggaccaccccgtcatc
aagtacaacgtgctgtgggaggagggcaaggcggcgctggagcagctgctcaagttcatg
gtgcacccggccatctccagcatcaacctgacggccgcgctcggctcgctggccaccatc
gcccgccagcggcccatgttcatggccgaggtcatccaggcctacgagaccctccatgcc
aacctgcctcccacgctggccaagtcccaggtgagcagcgtgcggaagaacctgaagctg
cacctgctgagcgtgctgcggcacccgtcctcgggcgacttccagccgcagatcaccacg
ctgctggtggacctgggcacgccgcaggccgagatcgcccgcagcatgcccagcccccgc
gaggcccgcaagcggccccgcgacgagcccgacgccgccctcaagaagatgaagattgag
ccacccctgggtgaggatgacgaggacaaggacctggaggcgccggcggtggccgtggcc
aaagcggccggagcggtcactgtcccctcggacaccgacatcacggccgagttcctgcag
ccgctgctgacccccgagaacgtggccaacctggtgctgatcagcatggtgtacctgccc
gaggccatgcccgcctccttccaggccacctacacgcccgtggagtcggccggcaccgag
gcgcagatcaagcacctggcgcggctgatggccacgcagatgaccgcagctggcctgggg
ccaggcgtggagcagaccaagctgctgcgggaggagcccaaggaggagaaggtggccaag
ccggacgccgtggtcatcaagcggcgcctgtcggcgctgggccagggccaggccatcgcc
gtgctgggcgcccacggctcggccgcggggctgccggacgagaccccccaggccaagcgc
cggcccgagcccatcatgccggccacgcagccccggctggcgggcgccgggggccgtaag
aaggtgttccgcctcagcgacgtgctgaagccgctcagcgaggtgcaggtggagaagctg
aagctcggcgccgtgcgccgcatcctgcgctccgagagggccgtggcggccagcggggcc
gcccaggcccgagtgaagatcctggcctcgctggtgacgcagttcgaggtgcccctcaag
ggcgaggtgctgtccttcatcctggacgacgtgcggggccgcctggacctggccttcgcg
tggctcttccaggagtacaacgcgcacctggcgcgcggcggccccggcggcctggagcgc
tacgacgagtgcctgatcgggctgctggccgggctgcaggagaaacccgaccagaaggac
gggatcttcaccaaggtggtgctggaggcgccgctgatcaccgagagcgccctggaggtg
atccgcaagtactgcgaggacgaggtggggacaccagggggacactggggggacattggg
gggggacacatggagatggcacacaaaggtgacacggccagggtgggtggggaggtggca
cctggaggtgacacctggaggtgcccgggtgtcaccgggcgccgcagtgacgcgcgggcg
gcgcaggtgcggcagcaggcgctgcagttcatcaagcgcatgtacgagaaggagcagctg
cgcgagtacgtggagaagttcgccctcaactacctgcagctgctggtgcaccccaacccg
ccctccgtgctcttcggcgccgacaaggacaccggtgagggccccgcgatcccgggggtc
cggaacgttccagggggtccaaaatgttccgtgggaatcgcggatgttctgtgtggaatt
caaaatgttcc
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integrated database retrieval system
