Pyrgilauda ruficollis (rufous-necked snowfinch): 121363711
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Entry
121363711 CDS
T07608
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pruf03036
]
121363711 (SHOC1)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121363711 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
121363711
NCBI-ProteinID:
XP_041342235
LinkDB
All DBs
Position
Unknown
AA seq
1452 aa
AA seq
DB search
MFAALKYHSTDYLYESMARQKFSIWKLSLCFPACLHQDEKYHFNGLFADDKYRKPWTRIG
SAQNMMAIAVLDQWQKSLPVEDFLEKKPISSVEFQTSNDLIEVIPSSNPCSQIDTEESFL
LMKNDFKEDSTQEKYFKIYYAAEFKESQQDLCLEEEFVFIDSLEHFCKKLPTLSVLQSRL
QFFLVKDPLLDSEGQFLTAENIFRECLTFQNGVKMEESQNELQGIEESFCTVSLKDEEYF
LLPVDLEFGKPNNGRSDCVKIPSHLQLKEVLNLAPVTVGDEDLCKQVIGEDLKAEITNKI
EISKYGAIPQDVCSSISTSMLEFCASAEYIPYLKDEMEVPLTPPCRQQRSWVNFLCRGLQ
EEPISLSGNSILIAEPSREFLESLIWQSEKYRDNMSSLLLVEHPAVSLAHQHHSLRELQK
MLPLEVEAPMLGSLEEGWLLHRGLHPAAVEILEQFNMDGSNANSLLPTEVETFTQFTSYQ
LERWLEEKNSVTNQELLSAGRHQSEKVVNPDLSLHIQRQNFALSALSPAKIHRTSTSAAE
LTGGSISKIKTEEAICFLNQEKKTLKPSESDSCKDVSSKLDKSSCSGKSASLALVSKWAN
DDSDLNNFIMMRSNYTVIPREEKHYVDRSEKVIQPEEQHMSVLKEDDSFCETLKTEEKNQ
ENKDSITVNIQPSESQCQAYCLLEEAAIPVLKDLTHLDILASVTWSFDSVKFDHTRFFLK
QQEKVICDNFKQGKIDEKEIMLFRHAALVHLLVTVRDLLLTCGLDTALGYLSKAKDFYKN
ILESCLNNLWRQLKIVQYSSQKKHETNPKVTALQCEMLNWMKSCGEKHSVKILIITRMDS
EREKAAFIHPLSRIEGLKTVDLNSEKKGSPLSCKEIISNRYSCIIVHNQQIGADFPWTHF
SLVMEYDYSENSGWKNLCKNLNVTYMTFQTTLPEIIQMGNHGGSFLLEVQIPYVFLTTEG
LLNMPDILQRFESKYSITFVERSSSYSLRLFGSTDRCVVLTIDECTAIFLQSVEELNYED
SCDTVISRLVALSLQYMCCWIIFYSRERLSLEYSLKGNTLLNLVLIYAALIELTQKSEDF
EVKVVLTPGIEETALVIRQIADNVLIASNISPHEWLDKSWLSVLPSEPEKCLLTFPCINP
LVAQFMLKKGSSLNRLFLASFDQLQELLPQAPKKVLKHFSDIVSSYSLNTAAPLEKTVTG
ASHTENQNNFNTSYLDKKQNCQILELLDKAQNSRGTSLMNSEALIPPLNLHKSFLKSDLP
SCMQKNACSSDVITRRKLDFSAVSKDCEDFAHLEVKNSLHVKRQPFRMHDSSDHTSKDSE
KEDFFAAFSDCAPQESSKSFLDEFRDTTFKSLEIQTDQPLWNEGPSSTGPRNSFVQGGFL
SDFFDDMDELPNLNFSQIGETSKGKRKQRPSFLWTKEKIKTGFSEVQEFKKRRLTYERVP
GRRDGQTRLKFF
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagctttgaagtatcactcaacagactatttatatgagagcatggcaaggcag
aagttttccatctggaaattatcactttgctttcctgcctgtttacatcaagatgaaaag
tatcatttcaatggactctttgctgatgataagtataggaagccatggactagaattggt
tcagcacagaacatgatggctattgcagtattggatcaatggcagaaaagtttacctgtg
gaggacttcttggaaaagaaacctatctcctctgtagagtttcagactagtaatgattta
atagaagttattccaagttcaaatccttgctctcagattgacacagaagaatctttttta
cttatgaagaatgattttaaggaagactccacccaagaaaaatatttcaagatttactat
gctgctgaatttaaagaatcacagcaagatttatgtttggaagaggagtttgtttttatt
gatagtcttgaacatttttgtaaaaaattgccaactttatctgtacttcagagcagacta
cagttttttttagtgaaagatccccttttggattctgaaggacagtttttaacagcagag
aatattttcagagaatgtttgactttccaaaatggagtgaagatggaagagagtcaaaat
gaattgcagggaattgaagagagtttctgtactgtatctctgaaagatgaagagtatttc
ctgttgcctgttgatttagaattcggcaaacctaacaatggcagatctgattgtgttaag
attccatcacacttgcaactaaaggaggtgttaaatttagctccagtcactgtaggtgat
gaagacctttgcaaacaagtgatcggagaagatctcaaagcagaaattacaaacaaaata
gaaatttcaaagtatggtgccattccacaagatgtttgctccagtattagcacaagtatg
ttggaattctgtgcatcagctgaatatattccatatttgaaagatgaaatggaagtgcct
ttaactcctccatgcagacagcaaagatcatgggttaattttctgtgcagaggacttcaa
gaagaacctatttcactctctggtaacagtattttgattgcagagccctctagggaattc
ttagaatctttgatatggcaatcagagaagtatcgggataatatgagctctcttttgctt
gtcgagcatccagctgttagccttgcacatcagcatcattcactgagagaactgcagaaa
atgctgccacttgaggttgaagcaccaatgcttggctcactagaggagggctggttgctt
cataggggtttacatccagcagctgtagaaattttggaacaattcaatatggatggaagt
aatgcaaacagtctgcttcctacagaagtagaaacattcacacaatttacatcatatcaa
ttagaaagatggcttgaggagaagaattctgtgacaaaccaagagctgctttctgctgga
agacatcagtcagagaaagtagttaatcctgacttgtcactgcatattcaaaggcagaac
tttgccctgagtgctctgtcacctgccaaaattcacaggacaagtacatctgcagcagag
cttactggaggaagcataagcaagattaagacagaagaggcaatttgcttcttaaaccaa
gaaaagaaaaccctcaaaccatctgaatcagacagctgtaaagatgtgtcttctaaacta
gacaaatcatcctgcagtggaaagtctgcatcacttgcacttgtttctaaatgggctaac
gatgattctgatctgaacaactttattatgatgagatctaactatacagtcatcccaaga
gaggaaaaacattatgtagatagatctgaaaaagtgatacagcctgaagagcagcatatg
agtgttctcaaagaggatgattctttttgtgagactctaaaaacagaggaaaaaaaccaa
gagaataaagacagtatcactgtcaatattcaaccatcagaaagccaatgccaggcatac
tgcctcttggaagaagcagctattcctgtactaaaagatttgacacacctggatatactt
gcttctgttacttggagctttgacagtgttaaatttgatcacacaaggtttttcttaaaa
caacaagagaaagtgatatgtgataattttaaacaaggtaaaatagatgagaaggagatc
atgctattcagacatgctgctctggtacacctgctggtgacagttcgagatctgctgcta
acatgtggcttggatacagctctaggttatttgtccaaggcaaaggatttctataaaaac
attttagaatcctgtttgaataatctctggaggcagctgaagattgtacagtacagcagc
cagaaaaagcatgaaacaaatcccaaagtaacagcacttcagtgtgaaatgttaaattgg
atgaaaagttgtggagagaaacacagtgttaagatactaatcattacaaggatggactct
gaaagagaaaaagctgccttcattcacccattatctaggatagaaggtttgaaaactgtg
gatttgaattctgagaaaaaaggaagccctttaagttgtaaagagatcataagcaatagg
tattcctgcattattgtacataatcagcaaattggagctgacttcccttggactcacttc
tcactagtaatggaatacgattattctgaaaattctggctggaaaaatctgtgcaaaaat
ctgaatgttacttacatgacttttcaaaccaccctccctgaaataatacaaatggggaat
catggtggttcctttcttctggaagtacagattccatatgtattcctgacaactgaaggt
cttcttaatatgccagatattcttcagcgttttgaatccaagtacagcattacctttgtt
gaaagaagcagcagttactccttaaggctctttggaagtacagatcgatgtgttgtgctg
acaatagatgagtgcactgctatctttctgcagagtgtcgaagaactaaattatgaggac
tcctgtgacactgtaatatcaaggctggtggcattatcactccaatatatgtgctgttgg
attattttctattccagagaaagactgagtttagagtacagtctcaagggtaatactctg
cttaaccttgtcttaatttatgccgctctaattgaacttacacagaagtcagaagacttt
gaagtaaaggtagttcttacgccagggattgaagagacagcgctggtaatccgtcagatt
gctgacaacgtcttgatagcatctaatatcagtcctcatgagtggctggacaaatcctgg
ctttctgtcttgccatctgagccagagaaatgcctgcttacttttccatgtatcaatcct
ttggttgctcagtttatgctaaagaagggatcttcactgaacaggttatttcttgcaagc
tttgatcaactccaggaacttctgccacaggctccaaaaaaagttttaaagcatttcagt
gacatagtatcttcatacagcctaaatactgctgctcctctagaaaaaacagtgacaggt
gcatcacacacagaaaaccagaataacttcaacacatcgtatcttgataaaaaacaaaat
tgtcagattttagagctacttgataaggcacaaaacagcagaggaacatctcttatgaat
tctgaagccctaattcctccactgaatcttcataagagttttttaaagtctgatcttcca
agttgtatgcaaaagaacgcatgctcctcagatgtaattacaaggagaaagctggatttc
tctgctgtatcaaaggactgtgaagattttgctcatctagaagttaaaaattctctccat
gttaaaagacagcctttcagaatgcatgatagctctgatcatacttccaaagactctgaa
aaagaggatttctttgcagctttcagtgactgtgcacctcaggagagctctaagagtttt
ctagatgaatttagagacacaacatttaaaagcctagaaattcagactgaccagcccctg
tggaatgaggggccttcatccactggcccacgtaactcatttgttcaaggtggttttctc
tctgatttctttgatgatatggatgagcttccaaatctgaattttagccaaataggtgaa
acatctaaaggaaagagaaaacaaaggccttcattcttatggacaaaagaaaaaattaaa
acaggattttcagaagtacaggagttcaaaaaaaggagattgacatacgaaagagtccct
ggaagaagagatggacaaacacgtcttaaattcttttga
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